Diel Variation in Summer Stream Temperature in an Idaho Desert Stream and Implications for Identifying Thermal Refuges

Thermal refuges in streams are essential for the survival of coldwater fish species such as Redband trout (Oncorhynchus mykiss) in landscapes with stressful or lethal stream temperatures. We utilized an uncrewed aerial system (UAS) mounted with thermal and natural color sensors to conduct hourly flights over a 24 h period in the desert stream Little Jacks Creek during late summer when temperatures were near seasonal maximums and streamflow was near seasonal minimums. We used fine-resolution imagery to map stream temperatures and characterize how our thermal sensor exhibits variability across a diel period in an environment where thermal sensor viability had not yet been assessed. Thermal imagery from 3 out of 24 flights showed no significant differences when compared to true water temperatures from in-stream temperature loggers, which appeared to be highly dependent on atmospheric conditions. The thermal imagery (range of 9.17 to 21.04 °C) consistently underestimated HOBO logger stream temperatures (range of 13.6 to 17.1 °C) during cooler, nighttime flights and overestimated temperatures during hotter, afternoon hours, resulting in a global RMSE of 2.12 °C. Between-flight RMSE values ranged from 0.53 °C to 4.00 °C, within the error range of the thermal sensor. The thermal data support existing findings of optimal hours for flying UAS thermal surveys and showed specific patterns in TIR sensor accuracy that were dependent on the time of flight. This study yields valuable lessons for future stream temperature data collection in environments with highly variable temperatures, aiding in the calibration of thermal sensors on UAS missions. Furthermore, our results provide insights into environmental stressors such as increased stream temperatures, which is vital for conservation efforts for organisms that rely on coldwater refuges within desert streams.