Structural Reactivity of Diimine‐Dioxime Molecules in Anticancer Research: Quantum Chemical Insights, Molecular Modeling and ADMET Studies

Abstract This study carried out quantum chemical calculations and molecular modeling studies of five diimine‐dioxime molecules (1–5). The optimized molecular geometries, HOMOs–LUMOs and molecular electrostatic potential (MEP) diagrams of the molecules were calculated at the DFT/B3LYP/6–311G(d,p) level of theory. The calculated global reactivity parameters revealed that the hardest and most stable molecule is 1 ( η = 1.897 eV), while the softest and most chemically reactive molecule is 2 ( S = 1.621 eV −1 ). All compounds in silico ADMET and drug‐likeness parameters were generally within acceptable limits and all compounds except 3 were considered to have good oral bioavailability. Molecular docking studies were also performed using VEGFR2 (PDB ID: 2XIR) and EGFR (PDB ID: 1M17) proteins to predict the potential anticancer properties of the molecules. All binding energies obtained in molecular docking studies were between −7.8 and −9.7 kcal/mol. The behavior of the 2–2XIR complex with the best binding energy value of −9.7 kcal/mol under physiological conditions was performed by molecular dynamics (MD) simulation for 100 ns. The RMSD, RMSF, SASA, Rg, and hydrogen bonding parameters obtained by MD simulation confirmed the conformational stability of the 2–2XIR complex. All the results indicated that molecule 2 has the potential to contribute to studies on discovering new anticancer agents.

Authors

Institutions

Publication Details

Journal
ChemistrySelect
Published
2025-02-01
DOI
https://doi.org/10.1002/slct.202404231
Citations
2
Primary Topic
Free Radicals and Antioxidants
Type
article
Field-Weighted Citation Impact
1.87
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Structural Reactivity of Diimine‐Dioxime Molecules in Anticancer Research: Quantum Chemical Insights, Molecular Modeling and ADMET Studies

Zeliha Nur Yilmaz, Bülent Dede
2 citations
ChemistrySelect
Free Radicals and Antioxidants
1.87
article

Structural Reactivity of Diimine‐Dioxime Molecules in Anticancer Research: Quantum Chemical Insights, Molecular Modeling and ADMET Studies

Zeliha Nur Yilmaz, Bülent Dede
article en
2 citations

Abstract

Abstract This study carried out quantum chemical calculations and molecular modeling studies of five diimine‐dioxime molecules (1–5). The optimized molecular geometries, HOMOs–LUMOs and molecular electrostatic potential (MEP) diagrams of the molecules were calculated at the DFT/B3LYP/6–311G(d,p) level of theory. The calculated global reactivity parameters revealed that the hardest and most stable molecule is 1 ( η = 1.897 eV), while the softest and most chemically reactive molecule is 2 ( S = 1.621 eV −1 ). All compounds in silico ADMET and drug‐likeness parameters were generally within acceptable limits and all compounds except 3 were considered to have good oral bioavailability. Molecular docking studies were also performed using VEGFR2 (PDB ID: 2XIR) and EGFR (PDB ID: 1M17) proteins to predict the potential anticancer properties of the molecules. All binding energies obtained in molecular docking studies were between −7.8 and −9.7 kcal/mol. The behavior of the 2–2XIR complex with the best binding energy value of −9.7 kcal/mol under physiological conditions was performed by molecular dynamics (MD) simulation for 100 ns. The RMSD, RMSF, SASA, Rg, and hydrogen bonding parameters obtained by MD simulation confirmed the conformational stability of the 2–2XIR complex. All the results indicated that molecule 2 has the potential to contribute to studies on discovering new anticancer agents.

ChemistrySelectVol. 10(8)
Süleyman Demirel Üniversitesi (TR), Suleyman Demirel University (KZ)
Openalex Percentile: Top 17%
Free Radicals and Antioxidants
1.87
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Structural Reactivity of Diimine‐Dioxime Molecules in Anticancer Research: Quantum Chemical Insights, Molecular Modeling and ADMET Studies — Zeliha Nur Yilmaz, Bülent Dede · ChemistrySelect (2025) | TGRS Research Map | TGRS