Designing Target-specific Data Sets for Regioselectivity Predictions on Complex Substrates

The development of machine learning models to predict the regioselectivity of C(sp<sup>3</sup>)-H functionalization reactions is reported. A data set for dioxirane oxidations was curated from the literature and used to generate a model to predict the regioselectivity of C-H oxidation. To assess whether smaller, intentionally designed data sets could provide accuracy on complex targets, a series of acquisition functions were developed to select the most informative molecules for the specific target. Active learning-based acquisition functions that leverage predicted reactivity and model uncertainty were found to outperform those based on molecular and site similarity alone. The use of acquisition functions for data set elaboration significantly reduced the number of data points needed to perform accurate prediction, and it was found that smaller, machine-designed data sets can give accurate predictions when larger, randomly selected data sets fail. Finally, the workflow was experimentally validated on five complex substrates and shown to be applicable to predicting the regioselectivity of arene C-H radical borylation. These studies provide a quantitative alternative to the intuitive extrapolation from "model substrates" that is frequently used to estimate reactivity on complex molecules.

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Publication Details

Journal
Journal of the American Chemical Society
Published
2025-02-21
DOI
https://doi.org/10.1021/jacs.4c15902
Citations
6
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
3.11

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article

Designing Target-specific Data Sets for Regioselectivity Predictions on Complex Substrates

Gina Lee, Ashok Pandey, Jules Schleinitz, Sarah E. Reisman et al.
6 citations
Journal of the American Chemical Society
Machine Learning in Materials Science
3.11
article

Designing Target-specific Data Sets for Regioselectivity Predictions on Complex Substrates

Gina Lee, Ashok Pandey, Jules Schleinitz, Sarah E. Reisman, Alba Carretero‐Cerdán, Anat Milo, Yonatan Harnik, Anjali Gurajapu
article en
6 citations

Abstract

The development of machine learning models to predict the regioselectivity of C(sp<sup>3</sup>)-H functionalization reactions is reported. A data set for dioxirane oxidations was curated from the literature and used to generate a model to predict the regioselectivity of C-H oxidation. To assess whether smaller, intentionally designed data sets could provide accuracy on complex targets, a series of acquisition functions were developed to select the most informative molecules for the specific target. Active learning-based acquisition functions that leverage predicted reactivity and model uncertainty were found to outperform those based on molecular and site similarity alone. The use of acquisition functions for data set elaboration significantly reduced the number of data points needed to perform accurate prediction, and it was found that smaller, machine-designed data sets can give accurate predictions when larger, randomly selected data sets fail. Finally, the workflow was experimentally validated on five complex substrates and shown to be applicable to predicting the regioselectivity of arene C-H radical borylation. These studies provide a quantitative alternative to the intuitive extrapolation from "model substrates" that is frequently used to estimate reactivity on complex molecules.

Journal of the American Chemical SocietyVol. 147(9)
California Institute of Technology (US), Ben-Gurion University of the Negev (IL), Institute of Chemistry (CN), KTH Royal Institute of Technology (SE)
Hertz Foundation, Israel Science Foundation, Vetenskapsrådet, Kreitman School of Advanced Graduate Studies, Ben-Gurion University of the Negev, Division of Graduate Education, Division of Chemistry
Climate action
Openalex Percentile: Top 9%
Machine Learning in Materials Science
3.11
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