Quantitative Visualisierung von HTseq-Daten

Abstract High-throughput sequencing (HTseq) characterizes complex entities at the level of nucleic acid sequences, e. g. the transcriptome in a biopsy at cellular resolution, or an immune-receptor-repertoire. The complexity of HTseq data makes analysis challenging. Suitable methods are often missing. We therefore develop computational tools for quantitative visualization (quantitative modelling of data, then visualization of meaningful summaries) as illustrated with two examples, scBubble-tree and ClustIRR.

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Publication Details

Journal
BIOspektrum
Published
2025-02-01
DOI
https://doi.org/10.1007/s12268-025-2369-0
Primary Topic
Single-cell and spatial transcriptomics
Type
article
Field-Weighted Citation Impact
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article

Quantitative Visualisierung von HTseq-Daten

Simo Kitanovski, Daniel Hoffmann, Kai Wollek
BIOspektrum
Single-cell and spatial transcriptomics
article

Quantitative Visualisierung von HTseq-Daten

Simo Kitanovski, Daniel Hoffmann, Kai Wollek
article en

Abstract

Abstract High-throughput sequencing (HTseq) characterizes complex entities at the level of nucleic acid sequences, e. g. the transcriptome in a biopsy at cellular resolution, or an immune-receptor-repertoire. The complexity of HTseq data makes analysis challenging. Suitable methods are often missing. We therefore develop computational tools for quantitative visualization (quantitative modelling of data, then visualization of meaningful summaries) as illustrated with two examples, scBubble-tree and ClustIRR.

BIOspektrumVol. 31(1)
University of Duisburg-Essen (DE)
Openalex Percentile: Top 97%
Single-cell and spatial transcriptomics
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