osl-ephys: a Python toolbox for the analysis of electrophysiology data

We describe OHBA Software Library for the analysis of electrophysiology data (osl-ephys). This toolbox builds on top of the widely used MNE-Python package and provides unique analysis tools for magneto-/electro-encephalography (M/EEG) sensor and source space analysis, which can be used modularly. In particular, it facilitates processing large amounts of data using batch parallel processing, with high standards for reproducibility through a config API and log keeping, and efficient quality assurance by producing HTML processing reports. It also provides new functionality for doing coregistration, source reconstruction and parcellation in volumetric space, allowing for an alternative pipeline that avoids the need for surface-based processing, e.g., through the use of Fieldtrip. Here, we introduce osl-ephys by presenting examples applied to a publicly available M/EEG data (the multimodal faces dataset). osl-ephys is open-source software distributed on the Apache License and available as a Python package through PyPi and GitHub.

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Publication Details

Journal
Frontiers in Neuroscience
Published
2025-02-21
DOI
https://doi.org/10.3389/fnins.2025.1522675
Citations
11
Primary Topic
EEG and Brain-Computer Interfaces
Type
article
Field-Weighted Citation Impact
15.74

Funders

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article

osl-ephys: a Python toolbox for the analysis of electrophysiology data

Chetan Gohil, Mats W.J. van Es, Andrew J. Quinn, Mark W. Woolrich
11 citations
Frontiers in Neuroscience
EEG and Brain-Computer Interfaces
15.74
article

osl-ephys: a Python toolbox for the analysis of electrophysiology data

Chetan Gohil, Mats W.J. van Es, Andrew J. Quinn, Mark W. Woolrich
article en
11 citations

Abstract

We describe OHBA Software Library for the analysis of electrophysiology data (osl-ephys). This toolbox builds on top of the widely used MNE-Python package and provides unique analysis tools for magneto-/electro-encephalography (M/EEG) sensor and source space analysis, which can be used modularly. In particular, it facilitates processing large amounts of data using batch parallel processing, with high standards for reproducibility through a config API and log keeping, and efficient quality assurance by producing HTML processing reports. It also provides new functionality for doing coregistration, source reconstruction and parcellation in volumetric space, allowing for an alternative pipeline that avoids the need for surface-based processing, e.g., through the use of Fieldtrip. Here, we introduce osl-ephys by presenting examples applied to a publicly available M/EEG data (the multimodal faces dataset). osl-ephys is open-source software distributed on the Apache License and available as a Python package through PyPi and GitHub.

Frontiers in NeuroscienceVol. 19
The University of Sydney (AU), University of Oxford (GB), Wellcome Centre for Integrative Neuroimaging (GB), University of Birmingham (GB)
Wellcome Trust, National Institute for Health and Care Research, Department of Health and Social Care, Medical Research Council
Openalex Percentile: Top 1%
EEG and Brain-Computer Interfaces
15.74
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