Increase Docking Score Screening Power by Simple Fusion With <scp>CNNscore</scp>

Scoring functions (SFs) of molecular docking is a vital component of structure-based virtual screening (SBVS). Traditional SFs yield their inherent shortage for idealized approximations and simplifications predicting the binding affinity. Complementarily, SFs based on deep learning (DL) have emerged as powerful tools for capturing intricate features within protein-ligand (PL) interactions. We here present a docking-score fusion strategy that integrates pose scores derived from GNINA's convolutional neural network (CNN) with traditional docking scores. Extensive validation on diverse datasets has shown that by means of multiplying Watvina docking score by CNNscore demonstrates state-of-the-art screening power. Furthermore, in a reverse practice, our docking-score fusion technique was incorporated into the virtual screening (VS) workflow aimed at identifying inhibitors of the challenging target TYK2. Two promising hits with IC<sub>50</sub> 9.99 μM and 13.76 μM in vitro were identified from nearly 12 billion molecules.

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Publication Details

Journal
Journal of Computational Chemistry
Published
2025-02-21
DOI
https://doi.org/10.1002/jcc.70060
Citations
1
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
1.50

Funders

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article

Increase Docking Score Screening Power by Simple Fusion With CNNscore

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article en
1 citations

Abstract

Scoring functions (SFs) of molecular docking is a vital component of structure-based virtual screening (SBVS). Traditional SFs yield their inherent shortage for idealized approximations and simplifications predicting the binding affinity. Complementarily, SFs based on deep learning (DL) have emerged as powerful tools for capturing intricate features within protein-ligand (PL) interactions. We here present a docking-score fusion strategy that integrates pose scores derived from GNINA's convolutional neural network (CNN) with traditional docking scores. Extensive validation on diverse datasets has shown that by means of multiplying Watvina docking score by CNNscore demonstrates state-of-the-art screening power. Furthermore, in a reverse practice, our docking-score fusion technique was incorporated into the virtual screening (VS) workflow aimed at identifying inhibitors of the challenging target TYK2. Two promising hits with IC<sub>50</sub> 9.99 μM and 13.76 μM in vitro were identified from nearly 12 billion molecules.

Journal of Computational ChemistryVol. 46(6)
Binzhou Medical University (CN), Marine Biomedical Research Institute of Qingdao (CN), Central Hospital of Zibo (CN), Ocean University of China (CN)
National Natural Science Foundation of China, Natural Science Foundation of Shandong Province, Taishan Scholar Foundation of Shandong Province
Openalex Percentile: Top 19%
Computational Drug Discovery Methods
1.50
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