Hydroxycinnamoyl-coenzyme A: tetrahydroxyhexanedioate hydroxycinnamoyl transferase (HHHT) from <i>Phaseolus vulgaris</i> L.: phylogeny, expression pattern, kinetic parameters, and active site analysis

BAHD acyl-coenzyme A (CoA) transferases comprise a large family of enzymes in plants which transfer an acyl group from a CoA thioester to hydroxyl or amine groups to form esters or amides, respectively. Clade Vb of this family primarily utilizes hydroxycinnamoyl-CoA as the acyl donor. These enzymes are involved in biosynthesis of diverse specialized metabolites with functions such as structure (<i>e.g</i>., lignin formation) and biotic/abiotic stress mitigation. The diversity of these enzymes has arisen from both divergent and convergent evolution, making it difficult to predict substrate specificity or enzyme function based on homology, and relatively few BAHD transferases have been characterized biochemically with respect to substrate specificity. We previously identified a hydroxycinnamoyl-CoA: tetrahydroxyhexanedioate hydroxycinnamoyl transferase (HHHT) from common bean capable of transferring hydroxycinnamic acids to mucic or saccharic acid to form the corresponding esters. Here, to better understand the structure/function relationships of this enzyme, we have further characterized it with respect to expression pattern, kinetic parameters, and predicted three-dimensional (3-D) structure and active site interactions with acceptor substrates. The <i>hhht</i> gene was expressed predominantly in leaves and to a lesser extent flowers and shoots. <i>K</i> <sub>M</sub> values did not vary greatly among donor or among acceptor substrates (generally less than two-fold), while <i>k</i> <sub>cat</sub> values were consistently higher for saccharic acid as substrate compared to mucic acid, leading to higher catalytic efficiency (as <i>k</i> <sub>cat</sub>/<i>K</i> <sub>M</sub>) for saccharic acid. Both acceptors had similar binding poses when docked into the active site, and the proximity of multiple hydroxyl groups to the catalytic His 150, especially for saccharic acid, might provide some insights into regiospecificity. These findings provide a foundation for better understanding how the 3-D structure of BAHD transferases relates to their substrate specificity, as we explore the chemistry of the active site and interactions with ligands. This could ultimately lead to better prediction of their function and ability to rationally design BAHD transferases to make useful and novel products.

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Publication Details

Journal
PeerJ
Published
2025-02-20
DOI
https://doi.org/10.7717/peerj.19037
Citations
2
Primary Topic
Biofuel production and bioconversion
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article
Field-Weighted Citation Impact
1.35
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article

Hydroxycinnamoyl-coenzyme A: tetrahydroxyhexanedioate hydroxycinnamoyl transferase (HHHT) from Phaseolus vulgaris L.: phylogeny, expression pattern, kinetic parameters, and active site analysis

Christina Stonoha‐Arther, Amanda Fanelli, Michael L. Sullivan
2 citations
PeerJ
Biofuel production and bioconversion
1.35
article

Hydroxycinnamoyl-coenzyme A: tetrahydroxyhexanedioate hydroxycinnamoyl transferase (HHHT) from Phaseolus vulgaris L.: phylogeny, expression pattern, kinetic parameters, and active site analysis

Christina Stonoha‐Arther, Amanda Fanelli, Michael L. Sullivan
article en
2 citations

Abstract

BAHD acyl-coenzyme A (CoA) transferases comprise a large family of enzymes in plants which transfer an acyl group from a CoA thioester to hydroxyl or amine groups to form esters or amides, respectively. Clade Vb of this family primarily utilizes hydroxycinnamoyl-CoA as the acyl donor. These enzymes are involved in biosynthesis of diverse specialized metabolites with functions such as structure (<i>e.g</i>., lignin formation) and biotic/abiotic stress mitigation. The diversity of these enzymes has arisen from both divergent and convergent evolution, making it difficult to predict substrate specificity or enzyme function based on homology, and relatively few BAHD transferases have been characterized biochemically with respect to substrate specificity. We previously identified a hydroxycinnamoyl-CoA: tetrahydroxyhexanedioate hydroxycinnamoyl transferase (HHHT) from common bean capable of transferring hydroxycinnamic acids to mucic or saccharic acid to form the corresponding esters. Here, to better understand the structure/function relationships of this enzyme, we have further characterized it with respect to expression pattern, kinetic parameters, and predicted three-dimensional (3-D) structure and active site interactions with acceptor substrates. The <i>hhht</i> gene was expressed predominantly in leaves and to a lesser extent flowers and shoots. <i>K</i> <sub>M</sub> values did not vary greatly among donor or among acceptor substrates (generally less than two-fold), while <i>k</i> <sub>cat</sub> values were consistently higher for saccharic acid as substrate compared to mucic acid, leading to higher catalytic efficiency (as <i>k</i> <sub>cat</sub>/<i>K</i> <sub>M</sub>) for saccharic acid. Both acceptors had similar binding poses when docked into the active site, and the proximity of multiple hydroxyl groups to the catalytic His 150, especially for saccharic acid, might provide some insights into regiospecificity. These findings provide a foundation for better understanding how the 3-D structure of BAHD transferases relates to their substrate specificity, as we explore the chemistry of the active site and interactions with ligands. This could ultimately lead to better prediction of their function and ability to rationally design BAHD transferases to make useful and novel products.

PeerJVol. 13
Oak Ridge Associated Universities (US), Agricultural Research Service (US), United States Department of Agriculture (US), U.S. Dairy Forage Research Center (US), Oak Ridge Institute for Science and Education
Openalex Percentile: Top 22%
Biofuel production and bioconversion
1.35
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