Run-length distribution of self-assembling cargos in crowded environments

Abstract Intracellular transport, carried out by motor proteins, is crucial for numerous biological functions of the cell. Cytoskeletal motor proteins such as kinesins and dyneins move on the biopolymer, microtubule, carrying different kinds of biomolecules as cargo to deliver these at required destinations. Such transport is often impeded by a crowded environment along the microtubule due to other motor proteins and various cellular organelles. Here, we study the motion of a self-assembling cargo that, during its translocation, can associate kinesins bound to the microtubules. This strategy is believed to help the cargo move efficiently along the microtubule crowded by free kinesins. Using the idea of first-passage time and the backward master equation approach, we determine the run-length distribution of such cargo under different crowding densities. We show that for high kinesin-association rates, the average run-length shows a peak with the crowding density while, for low kinesin-association rates, it decreases monotonically with the crowding density.

Authors

Institutions

Publication Details

Journal
Journal of Statistical Mechanics Theory and Experiment
Published
2025-02-03
DOI
https://doi.org/10.1088/1742-5468/adab6f
Primary Topic
Modular Robots and Swarm Intelligence
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Run-length distribution of self-assembling cargos in crowded environments

Sutapa Mukherji
Journal of Statistical Mechanics Theory and Experiment
Modular Robots and Swarm Intelligence
article

Run-length distribution of self-assembling cargos in crowded environments

Sutapa Mukherji
article en

Abstract

Abstract Intracellular transport, carried out by motor proteins, is crucial for numerous biological functions of the cell. Cytoskeletal motor proteins such as kinesins and dyneins move on the biopolymer, microtubule, carrying different kinds of biomolecules as cargo to deliver these at required destinations. Such transport is often impeded by a crowded environment along the microtubule due to other motor proteins and various cellular organelles. Here, we study the motion of a self-assembling cargo that, during its translocation, can associate kinesins bound to the microtubules. This strategy is believed to help the cargo move efficiently along the microtubule crowded by free kinesins. Using the idea of first-passage time and the backward master equation approach, we determine the run-length distribution of such cargo under different crowding densities. We show that for high kinesin-association rates, the average run-length shows a peak with the crowding density while, for low kinesin-association rates, it decreases monotonically with the crowding density.

Journal of Statistical Mechanics Theory and ExperimentVol. 2025(2)
Ahmedabad University (IN)
Openalex Percentile: Top 97%
Modular Robots and Swarm Intelligence
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.