Novel Quantitative Assessment Pipeline of Organoid Growth Dynamics Using Adapted Light Absorption and Surface Area Normalization Models

2D characterization of organoids by light microscopy with live cell imaging systems provides a powerful, rapid approach toward characterizing organoid growth patterns and behavior under different conditions with high temporal resolution. However, current conventional analysis methods display critical flaws in their approximations, including inaccurate assumptions of linear light absorption kinetics and inappropriate normalization of organoid darkness. Organoid darkness represents cellular shedding and debris accumulation in the lumen of organoids and is thus proportional to the surface area, rather than to a 2D organoid projection as is conventionally used. This novel model and image processing pipeline accounts for these shortcomings by incorporating logarithmic light absorption parameters, a noncumulative measure of darkness, and surface area‐normalized darkness values which yield accurate and highly reproducible representation of organoid growth kinetics.

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Publication Details

Journal
Advanced NanoBiomed Research
Published
2025-02-16
DOI
https://doi.org/10.1002/anbr.202400138
Citations
1
Primary Topic
3D Printing in Biomedical Research
Type
article
Field-Weighted Citation Impact
0.67

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article

Novel Quantitative Assessment Pipeline of Organoid Growth Dynamics Using Adapted Light Absorption and Surface Area Normalization Models

Matthias Zilbauer, Reece McCoy, Woojin Yang, Róisı́n M. Owens et al.
1 citations
Advanced NanoBiomed Research
3D Printing in Biomedical Research
0.67
article

Novel Quantitative Assessment Pipeline of Organoid Growth Dynamics Using Adapted Light Absorption and Surface Area Normalization Models

Matthias Zilbauer, Reece McCoy, Woojin Yang, Róisı́n M. Owens, Eva Blahusova
article en
1 citations

Abstract

2D characterization of organoids by light microscopy with live cell imaging systems provides a powerful, rapid approach toward characterizing organoid growth patterns and behavior under different conditions with high temporal resolution. However, current conventional analysis methods display critical flaws in their approximations, including inaccurate assumptions of linear light absorption kinetics and inappropriate normalization of organoid darkness. Organoid darkness represents cellular shedding and debris accumulation in the lumen of organoids and is thus proportional to the surface area, rather than to a 2D organoid projection as is conventionally used. This novel model and image processing pipeline accounts for these shortcomings by incorporating logarithmic light absorption parameters, a noncumulative measure of darkness, and surface area‐normalized darkness values which yield accurate and highly reproducible representation of organoid growth kinetics.

Advanced NanoBiomed ResearchVol. 5(5)
Wellcome/MRC Cambridge Stem Cell Institute (GB), University of Cambridge (GB)
Leona M. and Harry B. Helmsley Charitable Trust, Engineering and Physical Sciences Research Council
Openalex Percentile: Top 35%
3D Printing in Biomedical Research
0.67
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