<scp>YOLO</scp> ‐Behaviour: A simple, flexible framework to automatically quantify animal behaviours from videos

Abstract Manually coding behaviours from videos is essential to study animal behaviour but it is labour‐intensive and susceptible to inter‐rater bias and reliability issues. Recent developments of computer vision tools enable the automatic quantification of behaviours, supplementing or even replacing manual annotation. However, widespread adoption of these methods is still limited, due to the lack of annotated training datasets and domain‐specific knowledge required to optimize these models for animal research. Here, we present YOLO‐Behaviour, a flexible framework for identifying visually distinct behaviours from video recordings. The framework is robust, easy to implement, and requires minimal manual annotations as training data. We demonstrate the flexibility of the framework with case studies for event‐wise detection in house sparrow nestling provisioning, Siberian jay feeding, human eating behaviours and frame‐wise detections of various behaviours in pigeons, zebras and giraffes. Our results show that the framework reliably detects behaviours accurately and retrieve comparable accuracy metrics to manual annotation. However, metrics extracted for event‐wise detection were less correlated with manual annotation, and potential reasons for the discrepancy between manual annotation and automatic detection are discussed. To mitigate this problem, the framework can be used as a hybrid approach of first detecting events using the pipeline and then manually confirming the detections, saving annotation time. We provide detailed documentation and guidelines on how to implement the YOLO‐Behaviour framework, for researchers to readily train and deploy new models on their own study systems. We anticipate the framework can be another step towards lowering the barrier of entry for applying computer vision methods in animal behaviour.

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Publication Details

Journal
Methods in Ecology and Evolution
Published
2025-02-12
DOI
https://doi.org/10.1111/2041-210x.14502
Citations
18
Primary Topic
Bat Biology and Ecology Studies
Type
article
Field-Weighted Citation Impact
54.48

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article

YOLO ‐Behaviour: A simple, flexible framework to automatically quantify animal behaviours from videos

Fumihiro Kano, Britta Renner, Terry Burke, Julia Schroeder et al.
18 citations
Methods in Ecology and Evolution
Bat Biology and Ecology Studies
54.48
article

YOLO ‐Behaviour: A simple, flexible framework to automatically quantify animal behaviours from videos

Fumihiro Kano, Britta Renner, Terry Burke, Julia Schroeder, Alex Hoi Hang Chan, Shinichi Nakagawa, Prasetia Utama Putra, Michael Griesser, William D. Pearse, Andrea Meltzer, Harald Thomas Schupp, Saverio Lubrano, Jana Straßheim, Johanna Köchling
article en
18 citations

Abstract

Abstract Manually coding behaviours from videos is essential to study animal behaviour but it is labour‐intensive and susceptible to inter‐rater bias and reliability issues. Recent developments of computer vision tools enable the automatic quantification of behaviours, supplementing or even replacing manual annotation. However, widespread adoption of these methods is still limited, due to the lack of annotated training datasets and domain‐specific knowledge required to optimize these models for animal research. Here, we present YOLO‐Behaviour, a flexible framework for identifying visually distinct behaviours from video recordings. The framework is robust, easy to implement, and requires minimal manual annotations as training data. We demonstrate the flexibility of the framework with case studies for event‐wise detection in house sparrow nestling provisioning, Siberian jay feeding, human eating behaviours and frame‐wise detections of various behaviours in pigeons, zebras and giraffes. Our results show that the framework reliably detects behaviours accurately and retrieve comparable accuracy metrics to manual annotation. However, metrics extracted for event‐wise detection were less correlated with manual annotation, and potential reasons for the discrepancy between manual annotation and automatic detection are discussed. To mitigate this problem, the framework can be used as a hybrid approach of first detecting events using the pipeline and then manually confirming the detections, saving annotation time. We provide detailed documentation and guidelines on how to implement the YOLO‐Behaviour framework, for researchers to readily train and deploy new models on their own study systems. We anticipate the framework can be another step towards lowering the barrier of entry for applying computer vision methods in animal behaviour.

Methods in Ecology and EvolutionVol. 16(4)
Turing Institute (GB), University of Alberta (CA), Stockholm University (SE), University of Konstanz (DE), British Library (GB), Boréa (Sweden) (SE), Max Planck Institute of Animal Behavior (DE), The Alan Turing Institute (GB), Imperial College London (GB), University of Sheffield (GB)
Deutsche Forschungsgemeinschaft
Openalex Percentile: Top 0%
Bat Biology and Ecology Studies
54.48
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