Localizing axial dense emitters based on single‐helix point spread function and compressed sensing

Among the approaches in three-dimensional (3D) single molecule localization microscopy, there are several point spread function (PSF) engineering approaches, in which depth information of molecules is encoded in 2D images. Usually, the molecules are excited sparsely in each raw image. The consequence is that the temporal resolution has to be sacrificed. In order to improve temporal resolution and ensure localization accuracy, we propose a method, SH-CS, based on light needle excitation, detection system with single helix-point spread function (SH-PSF), and compressed sensing (CS). Although the SH-CS method still has a limitation about the molecule density, it is suited for relatively dense molecules. For each light needle scanning position, an SH image of excited molecules is processed with CS algorithm to decode their axial information. Simulations demonstrated, for random distributed 1-15 molecules in depth range of 4 μm, the axial localization accuracy is 12.1-73.5 nm. The feasibility of this method is validated with a designed 3D sample composed of fluorescent beads.

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Publication Details

Journal
Nanophotonics
Published
2025-02-01
DOI
https://doi.org/10.1515/nanoph-2024-0516
Primary Topic
Advanced Fluorescence Microscopy Techniques
Type
article
Field-Weighted Citation Impact
0.00

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article

Localizing axial dense emitters based on single‐helix point spread function and compressed sensing

Gan Xiang, Yihong Ji, Junle Qu, Yanxiang Ni et al.
Nanophotonics
Advanced Fluorescence Microscopy Techniques
article

Localizing axial dense emitters based on single‐helix point spread function and compressed sensing

Gan Xiang, Yihong Ji, Junle Qu, Yanxiang Ni, Bin Yu, Heng Li, Hanzhe Wu, Danni Chen
article en

Abstract

Among the approaches in three-dimensional (3D) single molecule localization microscopy, there are several point spread function (PSF) engineering approaches, in which depth information of molecules is encoded in 2D images. Usually, the molecules are excited sparsely in each raw image. The consequence is that the temporal resolution has to be sacrificed. In order to improve temporal resolution and ensure localization accuracy, we propose a method, SH-CS, based on light needle excitation, detection system with single helix-point spread function (SH-PSF), and compressed sensing (CS). Although the SH-CS method still has a limitation about the molecule density, it is suited for relatively dense molecules. For each light needle scanning position, an SH image of excited molecules is processed with CS algorithm to decode their axial information. Simulations demonstrated, for random distributed 1-15 molecules in depth range of 4 μm, the axial localization accuracy is 12.1-73.5 nm. The feasibility of this method is validated with a designed 3D sample composed of fluorescent beads.

NanophotonicsVol. 14(4)
Shenzhen University (CN), Tsinghua–Berkeley Shenzhen Institute (CN), Tsinghua University (CN)
National Natural Science Foundation of China, National Key Research and Development Program of China
Openalex Percentile: Top 98%
Advanced Fluorescence Microscopy Techniques
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