Taxonomic and Genomic Characterization of Niveibacterium terrae sp. nov., a New Species from Riparian Soil in the Seomjin River, Republic of Korea

A novel Gram stain-negative, rod-shaped, non-motile bacterium, designated strain 24SJ04S-2T, was isolated from riparian soil near the Seomjin River, Republic of Korea. Phylogenetic analysis based on the 16S rRNA gene sequence placed strain 24SJ04S-2T within the genus Niveibacterium in the family Zoogloeaceae, with high similarity to Niveibacterium umoris (97.3%) and Niveibacterium microcysteis (96.7%). Whole-genome sequencing revealed a genome size of 3.98 Mbp with a G+C content of 63.9 mol%, and genomic relatedness metrics confirmed that strain 24SJ04S-2T represents a novel species. The strain demonstrated unique growth characteristics, including tolerance to low salinity and a broad pH range (5.0 to 10.0), suggesting ecological adaptability to fluctuating riparian environments. Chemotaxonomic analysis identified ubiquinone-8 as the major quinone, with diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylethanolamine as dominant polar lipids. Fatty acid profiling showed that summed feature 3 (C16:1ω7c and/or C16:1ω6c) and C16:0 were predominant. Genome analysis identified several biosynthetic gene clusters, including those potentially associated with antimicrobial and antioxidant compounds. Based on its distinct genomic and phenotypic characteristics, we propose the designation Niveibacterium terrae sp. nov. This discovery highlights the potential ecological and biotechnological roles of Niveibacterium terrae in nutrient cycling and environmental remediation in freshwater ecosystems. The type strain is 24SJ04S-2T (=KACC 23837T =FBCC-B16161T).

Authors

Institutions

Publication Details

Journal
Diversity
Published
2025-02-12
DOI
https://doi.org/10.3390/d17020126
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
0.00

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Taxonomic and Genomic Characterization of Niveibacterium terrae sp. nov., a New Species from Riparian Soil in the Seomjin River, Republic of Korea

Jaeduk Goh, Ahyoung Choi, Soo-Yeong Lee, Sumin Jang
Diversity
Genomics and Phylogenetic Studies
article

Taxonomic and Genomic Characterization of Niveibacterium terrae sp. nov., a New Species from Riparian Soil in the Seomjin River, Republic of Korea

Jaeduk Goh, Ahyoung Choi, Soo-Yeong Lee, Sumin Jang
article en

Abstract

A novel Gram stain-negative, rod-shaped, non-motile bacterium, designated strain 24SJ04S-2T, was isolated from riparian soil near the Seomjin River, Republic of Korea. Phylogenetic analysis based on the 16S rRNA gene sequence placed strain 24SJ04S-2T within the genus Niveibacterium in the family Zoogloeaceae, with high similarity to Niveibacterium umoris (97.3%) and Niveibacterium microcysteis (96.7%). Whole-genome sequencing revealed a genome size of 3.98 Mbp with a G+C content of 63.9 mol%, and genomic relatedness metrics confirmed that strain 24SJ04S-2T represents a novel species. The strain demonstrated unique growth characteristics, including tolerance to low salinity and a broad pH range (5.0 to 10.0), suggesting ecological adaptability to fluctuating riparian environments. Chemotaxonomic analysis identified ubiquinone-8 as the major quinone, with diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylethanolamine as dominant polar lipids. Fatty acid profiling showed that summed feature 3 (C16:1ω7c and/or C16:1ω6c) and C16:0 were predominant. Genome analysis identified several biosynthetic gene clusters, including those potentially associated with antimicrobial and antioxidant compounds. Based on its distinct genomic and phenotypic characteristics, we propose the designation Niveibacterium terrae sp. nov. This discovery highlights the potential ecological and biotechnological roles of Niveibacterium terrae in nutrient cycling and environmental remediation in freshwater ecosystems. The type strain is 24SJ04S-2T (=KACC 23837T =FBCC-B16161T).

DiversityVol. 17(2)
National Institute of Biological Resources (KR)
Ministry of Environment, Ministry of Education, India, Nakdonggang National Institute of Biological Resources, National Institute of Biological Resources
Openalex Percentile: Top 98%
Genomics and Phylogenetic Studies
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Taxonomic and Genomic Characterization of Niveibacterium terrae sp. nov., a New Species from Riparian Soil in the Seomjin River, Republic of Korea — Jaeduk Goh, Ahyoung Choi, et al. · Diversity (2025) | TGRS Research Map | TGRS