Maximum Entropy-Mediated Liquid-to-Solid Nucleation and Transition

Molecular dynamics (MD) simulations are a powerful tool for studying matter at the atomic scale. However, to simulate solids, an initial atomic structure is crucial for the successful execution of MD simulations but can be difficult to prepare due to insufficient atomistic information. At the same time, wide-angle X-ray scattering (WAXS) measurements can determine the radial distribution function (RDF) of atomic structures. However, the interpretation of RDFs is often challenging. Here, we present an algorithm that can bias MD simulations with RDFs by combining the information on the MD atomic interaction potential and the RDF under the principle of maximum relative entropy. We show that this algorithm can be used to adjust the RDF of one liquid model, e.g., the TIP3P water model, to reproduce the RDF and improve the angular distribution function (ADF) of another model, such as the TIP4P/2005 water model. In addition, we demonstrate that the algorithm can initiate crystallization in liquid systems, leading to both stable and metastable crystalline states defined by the RDF, e.g., crystallization of water to ice and liquid TiO<sub>2</sub> to rutile or anatase. Finally, we discuss how this method can be useful for improving interaction models, studying crystallization processes, interpreting measured RDFs, or training machine-learned potentials.

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Publication Details

Journal
Journal of Chemical Theory and Computation
Published
2025-02-12
DOI
https://doi.org/10.1021/acs.jctc.4c01621
Primary Topic
Material Dynamics and Properties
Type
article
Field-Weighted Citation Impact
0.00

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article

Maximum Entropy-Mediated Liquid-to-Solid Nucleation and Transition

Richard Kohns, Robert H. Meißner, Patrick Huber, Lars Dammann
Journal of Chemical Theory and Computation
Material Dynamics and Properties
article

Maximum Entropy-Mediated Liquid-to-Solid Nucleation and Transition

Richard Kohns, Robert H. Meißner, Patrick Huber, Lars Dammann
article en

Abstract

Molecular dynamics (MD) simulations are a powerful tool for studying matter at the atomic scale. However, to simulate solids, an initial atomic structure is crucial for the successful execution of MD simulations but can be difficult to prepare due to insufficient atomistic information. At the same time, wide-angle X-ray scattering (WAXS) measurements can determine the radial distribution function (RDF) of atomic structures. However, the interpretation of RDFs is often challenging. Here, we present an algorithm that can bias MD simulations with RDFs by combining the information on the MD atomic interaction potential and the RDF under the principle of maximum relative entropy. We show that this algorithm can be used to adjust the RDF of one liquid model, e.g., the TIP3P water model, to reproduce the RDF and improve the angular distribution function (ADF) of another model, such as the TIP4P/2005 water model. In addition, we demonstrate that the algorithm can initiate crystallization in liquid systems, leading to both stable and metastable crystalline states defined by the RDF, e.g., crystallization of water to ice and liquid TiO<sub>2</sub> to rutile or anatase. Finally, we discuss how this method can be useful for improving interaction models, studying crystallization processes, interpreting measured RDFs, or training machine-learned potentials.

Journal of Chemical Theory and ComputationVol. 21(4)
Universität Hamburg (DE), Deutsches Elektronen-Synchrotron DESY (DE), X-ray Instrumentation Associates (United States) (US), ARC Centre of Excellence for Coherent X-ray Science (AU), Helmholtz-Zentrum Hereon (DE), Science and Technology on Surface Physics and Chemistry Laboratory (CN), Institute for Disease Modeling (US), Hamburg University of Technology (DE)
Deutsche Forschungsgemeinschaft
Clean water and sanitation
Openalex Percentile: Top 98%
Material Dynamics and Properties
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