Improving Vapor Pressure Prediction Through Integration of Multiple Molecular Representations: A Super Learner Approach

ABSTRACT Accurate prediction of vapor pressure is essential in chemical engineering, environmental science, and pharmaceutical development, impacting the volatility and stability of compounds. Traditional methods often fall short for complex and new molecular structures. This study introduces an advanced machine learning approach, integrating graph neural networks (GNNs), and CHEM‐BERT models to improve prediction accuracy. Utilizing the largest dataset to date, we derived comprehensive chemical descriptors and fingerprints. We evaluated 19 predictive models, including ridge regression, random forest, support vector regression, and feed‐forward neural networks, trained on diverse features like PaDEL and Morgan fingerprints, chemical descriptors, and Chem‐BERT embeddings. Central to our methodology is the super learner architecture, which combines 19 multiple models to enhance accuracy. The super learner achieved a root mean squared error (RMSE) of 0.8200, outperforming individual models and previous reports. These successful results highlight the effectiveness of integrating GNNs and Chem‐BERT for capturing detailed molecular information, setting a new benchmark for vapor pressure prediction. This study underscores the value of advanced machine learning techniques and comprehensive datasets, offering a robust tool for researchers and paving the way for future advancements in chemical property prediction.

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Publication Details

Journal
Journal of Chemometrics
Published
2025-02-01
DOI
https://doi.org/10.1002/cem.70003
Citations
2
Primary Topic
Mass Spectrometry Techniques and Applications
Type
article
Field-Weighted Citation Impact
1.51

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article

Improving Vapor Pressure Prediction Through Integration of Multiple Molecular Representations: A Super Learner Approach

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2 citations
Journal of Chemometrics
Mass Spectrometry Techniques and Applications
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article

Improving Vapor Pressure Prediction Through Integration of Multiple Molecular Representations: A Super Learner Approach

Seul Lee, Byounghwak Lee, Ji Hyun Nam, Seongil Jo, Jahyun Koo, Jaeoh Kim, Keunhong Jeong, Jooyeon Lee, Donghyeon Yu
article en
2 citations

Abstract

ABSTRACT Accurate prediction of vapor pressure is essential in chemical engineering, environmental science, and pharmaceutical development, impacting the volatility and stability of compounds. Traditional methods often fall short for complex and new molecular structures. This study introduces an advanced machine learning approach, integrating graph neural networks (GNNs), and CHEM‐BERT models to improve prediction accuracy. Utilizing the largest dataset to date, we derived comprehensive chemical descriptors and fingerprints. We evaluated 19 predictive models, including ridge regression, random forest, support vector regression, and feed‐forward neural networks, trained on diverse features like PaDEL and Morgan fingerprints, chemical descriptors, and Chem‐BERT embeddings. Central to our methodology is the super learner architecture, which combines 19 multiple models to enhance accuracy. The super learner achieved a root mean squared error (RMSE) of 0.8200, outperforming individual models and previous reports. These successful results highlight the effectiveness of integrating GNNs and Chem‐BERT for capturing detailed molecular information, setting a new benchmark for vapor pressure prediction. This study underscores the value of advanced machine learning techniques and comprehensive datasets, offering a robust tool for researchers and paving the way for future advancements in chemical property prediction.

Journal of ChemometricsVol. 39(2)
Seoul National University (KR), Korea Military Academy (KR), Inha University (KR), Korea University (KR)
National Research Foundation, Inha University, National Research Foundation of Korea
Openalex Percentile: Top 21%
Mass Spectrometry Techniques and Applications
1.51
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