<scp>StratPal</scp> : An R package for creating stratigraphic paleobiology modelling pipelines

Abstract The fossil record is an important source of information to understand biological processes that take place over timescales not accessible to human observation or experiments. Fossil data are not a perfect reflection of past biological change, but a joint expression of stratigraphic, ecological, evolutionary and taphonomic effects. Stratigraphic paleobiology is a field dedicated to identifying these effects and accounting for them. We present StratPal , a R package in which stratigraphic, ecological, evolutionary and taphonomic modules can be combined into modelling pipelines for stratigraphic paleobiology. We describe the types of data that can be modified and transformed using this approach and briefly discuss potential extensions. As working examples, we show how the pipeline can be used to model clustering of last occurrences at hiatuses and condensation surfaces, leading to artefactual ‘extinction events’ caused by stratigraphic gaps.

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Publication Details

Journal
Methods in Ecology and Evolution
Published
2025-02-11
DOI
https://doi.org/10.1111/2041-210x.14507
Citations
1
Primary Topic
Geology and Paleoclimatology Research
Type
article
Field-Weighted Citation Impact
1.30

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article

StratPal : An R package for creating stratigraphic paleobiology modelling pipelines

Emilia Jarochowska, Niklas Hohmann
1 citations
Methods in Ecology and Evolution
Geology and Paleoclimatology Research
1.30
article

StratPal : An R package for creating stratigraphic paleobiology modelling pipelines

Emilia Jarochowska, Niklas Hohmann
article en
1 citations

Abstract

Abstract The fossil record is an important source of information to understand biological processes that take place over timescales not accessible to human observation or experiments. Fossil data are not a perfect reflection of past biological change, but a joint expression of stratigraphic, ecological, evolutionary and taphonomic effects. Stratigraphic paleobiology is a field dedicated to identifying these effects and accounting for them. We present StratPal , a R package in which stratigraphic, ecological, evolutionary and taphonomic modules can be combined into modelling pipelines for stratigraphic paleobiology. We describe the types of data that can be modified and transformed using this approach and briefly discuss potential extensions. As working examples, we show how the pipeline can be used to model clustering of last occurrences at hiatuses and condensation surfaces, leading to artefactual ‘extinction events’ caused by stratigraphic gaps.

Methods in Ecology and EvolutionVol. 16(4)
Utrecht University (NL)
HORIZON EUROPE European Research Council
Openalex Percentile: Top 26%
Geology and Paleoclimatology Research
1.30
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