Response of Soil Microbial Communities in Extreme Arid Deserts to Different Long-Term Management Methods

(1) Background: As population growth accelerates, unsustainable practices such as excessive cutting and burning of desert plants in the transition zones between deserts and oases have led to widespread vegetation loss. (2) Methods: The experiment was conducted in the oasis transition zone on the southern edge of the Taklamakan Desert from 2010 to 2023 year. Among the treatments included a control group (CK), cutting in spring (CS), cutting in fall (CF), burning in spring (BS), and flood water irrigation (FI). We used high-throughput sequencing to determine soil microbial composition and diversity and routine laboratory methods to determine soil physical and chemical properties and enzyme activities. (3) Results: No significant differences in bacterial alpha diversity (Chao1, Dominance, Observed_features, Pielou_e, Shannon, and Simpson) across the different long-term disturbance patterns. In fungi, the CK treatment showed significantly higher Chao1, Shannon, and Observed_features indices compared to BS and FI. Principal component analysis revealed a substantial reduction in bacterial community diversity in BS compared to FI, while fungal communities were lower in CK and CS compared to BS, CF, and FI; (4) Conclusions: Soil moisture content, electrical conductivity, organic carbon, and the activity of the enzyme cellobiohydrolase as key factors shaping the bacterial community. For fungi, organic carbon and the β-1,4-glucosidase enzyme were the main drivers.