Lacrimispora sinapis sp. nov., isolated from pickled potherb mustard (Brassica juncea Coss.)

Strain JR3<sup>T</sup> was isolated from Chinese pickled potherb mustard (<i>Brassica juncea</i> Coss.) purchased from a local market in Shanghai, China. A polyphasic approach including 16S rRNA gene sequence analysis, average nucleotide identity (ANI) analysis, digital DNA-DNA hybridization (dDDH), determination of G+C content and various phenotypic analyses was employed to characterize strain JR3<sup>T</sup>. The bacterium was rod-shaped, Gram-stain-positive, terminal round endospore-forming and catalase-positive. The strain could grow at a wide range of temperatures (20-45 °C) and pH values (6.0-8.0). Optimal growth of strain JR3<sup>T</sup> occurred at 35-40 °C and a pH value of 7.0. The strain exhibited growth at salt (NaCl) concentrations of up to 3% (w/v). The G+C content of the genomic DNA was 44.0 mol%. The major fatty acids were C16 : 0, C19 : 0 c9, 10, summed feature 10 (C18 : 1 c11/t9/t6) and C18 : 1 c9. 16S rRNA gene sequencing revealed that strain JR3<sup>T</sup> represents a member of the genus <i>Lacrimispora</i>, and it has higher sequence similarity with <i>Lacrimispora amygdalina</i> BR-10<sup>T</sup> (=DSM 12857<sup>T</sup>) (98.72%), <i>Lacrimispora saccharolyticum</i> WM1<sup>T</sup> (98.29%) and <i>Lacrimispora xylanolytica</i> sy1 (98.22%). The dDDH value for strain JR3<sup>T</sup> and phylogenetically related species within the genus <i>Lacrimispora</i> ranged from 17.7% to 29.9%. The ANI of strain JR3<sup>T</sup> with its closely related taxa was far lower than the threshold (95%-96%) used for species differentiation. Results of phylogenetic, physiological and phenotypic characterization confirmed that strain JR3<sup>T</sup> represented a novel species within the genus <i>Lacrimispora</i>, for which the name <i>Lacrimispora sinapis</i> sp. nov. is proposed. The type strain is JR3<sup>T</sup>=CCTCC AB 2024044<sup>T</sup>=LMG 33655<sup>T</sup>.

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Publication Details

Journal
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Published
2025-02-07
DOI
https://doi.org/10.1099/ijsem.0.006675
Citations
1
Primary Topic
Plant Disease Resistance and Genetics
Type
article
Field-Weighted Citation Impact
1.75

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article

Lacrimispora sinapis sp. nov., isolated from pickled potherb mustard (Brassica juncea Coss.)

Quanlu Ren, Zhengjun Wu, Zhenmin Liu, Jin Han et al.
1 citations
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Plant Disease Resistance and Genetics
1.75
article

Lacrimispora sinapis sp. nov., isolated from pickled potherb mustard (Brassica juncea Coss.)

Quanlu Ren, Zhengjun Wu, Zhenmin Liu, Jin Han, Danqi Wang
article en
1 citations

Abstract

Strain JR3<sup>T</sup> was isolated from Chinese pickled potherb mustard (<i>Brassica juncea</i> Coss.) purchased from a local market in Shanghai, China. A polyphasic approach including 16S rRNA gene sequence analysis, average nucleotide identity (ANI) analysis, digital DNA-DNA hybridization (dDDH), determination of G+C content and various phenotypic analyses was employed to characterize strain JR3<sup>T</sup>. The bacterium was rod-shaped, Gram-stain-positive, terminal round endospore-forming and catalase-positive. The strain could grow at a wide range of temperatures (20-45 °C) and pH values (6.0-8.0). Optimal growth of strain JR3<sup>T</sup> occurred at 35-40 °C and a pH value of 7.0. The strain exhibited growth at salt (NaCl) concentrations of up to 3% (w/v). The G+C content of the genomic DNA was 44.0 mol%. The major fatty acids were C16 : 0, C19 : 0 c9, 10, summed feature 10 (C18 : 1 c11/t9/t6) and C18 : 1 c9. 16S rRNA gene sequencing revealed that strain JR3<sup>T</sup> represents a member of the genus <i>Lacrimispora</i>, and it has higher sequence similarity with <i>Lacrimispora amygdalina</i> BR-10<sup>T</sup> (=DSM 12857<sup>T</sup>) (98.72%), <i>Lacrimispora saccharolyticum</i> WM1<sup>T</sup> (98.29%) and <i>Lacrimispora xylanolytica</i> sy1 (98.22%). The dDDH value for strain JR3<sup>T</sup> and phylogenetically related species within the genus <i>Lacrimispora</i> ranged from 17.7% to 29.9%. The ANI of strain JR3<sup>T</sup> with its closely related taxa was far lower than the threshold (95%-96%) used for species differentiation. Results of phylogenetic, physiological and phenotypic characterization confirmed that strain JR3<sup>T</sup> represented a novel species within the genus <i>Lacrimispora</i>, for which the name <i>Lacrimispora sinapis</i> sp. nov. is proposed. The type strain is JR3<sup>T</sup>=CCTCC AB 2024044<sup>T</sup>=LMG 33655<sup>T</sup>.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYVol. 75(2)
Shanghai Municipal State-owned Assets Supervision and Administration Commission, Ministry of Science and Technology of the People's Republic of China
Openalex Percentile: Top 17%
Plant Disease Resistance and Genetics
1.75
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