Computation of the pKa Values of Gallic Acid and Its Anionic Forms in Aqueous Solution: A Self-Similar Transformation Approach for Accurate Proton Hydration Free Energy Estimation

The Gibbs free energies of gallic acid (GA) and its anionic forms in aqueous solution were computed utilizing density functional theory (DFT) at the LSDA, M062X, B3LYP/QZVP levels, in conjunction with the SMD solvation model. The p<i>K</i><sub>a</sub> values corresponding to the four-step deprotonation of GA were determined through a non-linear self-similar transformation expressed as, p<i>K</i><sub>a</sub> = a⋅p<i>K</i><sub>a</sub>(the)<sup>c</sup> which establishes a link between theoretical and experimental p<i>K</i><sub>a</sub> values. This approach replaces the previously employed linear relationship, p<i>K</i><sub>a</sub> = a⋅p<i>K</i><sub>a</sub>(the) + b. The proposed model demonstrates high accuracy in reproducing the experimental p<i>K</i><sub>a</sub>1 = 4.16 ± 0.02, p<i>K</i><sub>a</sub>2 = 8.55 ± 0.01, p<i>K</i><sub>a</sub>3 =11.40 ± 0.10, p<i>K</i><sub>a</sub>4 =12.8 ± 0.40 values of GA, with a standard error (SE) of 0.045 and a mean absolute error (MAE) of 0.019 in p<i>K</i><sub>a</sub> unit. Furthermore, it facilitates the precise determination of the Gibbs free energy of the proton hydration, yielding ∆G(H<sup>+</sup>)<sub>aq</sub> = 259.4272(75) [kcal mol<sup>-1</sup>]. This result conforms acceptably with the experimental value of ∆G(H<sup>+</sup>)<sub>aq</sub> = -259.5 [kcal mol<sup>-1</sup>].

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Journal
Molecules
Published
2025-02-06
DOI
https://doi.org/10.3390/molecules30030742
Citations
4
Primary Topic
Free Radicals and Antioxidants
Type
article
Field-Weighted Citation Impact
3.74

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article

Computation of the pKa Values of Gallic Acid and Its Anionic Forms in Aqueous Solution: A Self-Similar Transformation Approach for Accurate Proton Hydration Free Energy Estimation

Marcin Molski
4 citations
Molecules
Free Radicals and Antioxidants
3.74
article

Computation of the pKa Values of Gallic Acid and Its Anionic Forms in Aqueous Solution: A Self-Similar Transformation Approach for Accurate Proton Hydration Free Energy Estimation

Marcin Molski
article en
4 citations

Abstract

The Gibbs free energies of gallic acid (GA) and its anionic forms in aqueous solution were computed utilizing density functional theory (DFT) at the LSDA, M062X, B3LYP/QZVP levels, in conjunction with the SMD solvation model. The p<i>K</i><sub>a</sub> values corresponding to the four-step deprotonation of GA were determined through a non-linear self-similar transformation expressed as, p<i>K</i><sub>a</sub> = a⋅p<i>K</i><sub>a</sub>(the)<sup>c</sup> which establishes a link between theoretical and experimental p<i>K</i><sub>a</sub> values. This approach replaces the previously employed linear relationship, p<i>K</i><sub>a</sub> = a⋅p<i>K</i><sub>a</sub>(the) + b. The proposed model demonstrates high accuracy in reproducing the experimental p<i>K</i><sub>a</sub>1 = 4.16 ± 0.02, p<i>K</i><sub>a</sub>2 = 8.55 ± 0.01, p<i>K</i><sub>a</sub>3 =11.40 ± 0.10, p<i>K</i><sub>a</sub>4 =12.8 ± 0.40 values of GA, with a standard error (SE) of 0.045 and a mean absolute error (MAE) of 0.019 in p<i>K</i><sub>a</sub> unit. Furthermore, it facilitates the precise determination of the Gibbs free energy of the proton hydration, yielding ∆G(H<sup>+</sup>)<sub>aq</sub> = 259.4272(75) [kcal mol<sup>-1</sup>]. This result conforms acceptably with the experimental value of ∆G(H<sup>+</sup>)<sub>aq</sub> = -259.5 [kcal mol<sup>-1</sup>].

MoleculesVol. 30(3)
Adam Mickiewicz University in Poznań (PL)
Poznańskie Centrum Superkomputerowo-Sieciowe
Affordable and clean energy
Openalex Percentile: Top 8%
Free Radicals and Antioxidants
3.74
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