Leveraging public AI tools to explore systems biology resources in mathematical modeling

Predictive mathematical modeling is an essential part of systems biology and is interconnected with information management. Systems biology information is often stored in specialized formats to facilitate data storage and analysis. These formats are not designed for easy human readability and thus require specialized software to visualize and interpret results. Therefore, comprehending modeling and underlying networks and pathways is contingent on mastering systems biology tools, which is particularly challenging for users with no or little background in data science or system biology. To address this challenge, we investigated the usage of public Artificial Intelligence (AI) tools in exploring systems biology resources in mathematical modeling. We tested public AI's understanding of mathematics in models, related systems biology data, and the complexity of model structures. Our approach can enhance the accessibility of systems biology for non-system biologists and help them understand systems biology without a deep learning curve.

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Publication Details

Journal
npj Systems Biology and Applications
Published
2025-02-04
DOI
https://doi.org/10.1038/s41540-025-00496-z
Citations
5
Primary Topic
Gene Regulatory Network Analysis
Type
article
Field-Weighted Citation Impact
4.03

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article

Leveraging public AI tools to explore systems biology resources in mathematical modeling

M.K. Jayanthi Kannan, Ming Zhang, Michael L. Blinov, Gabrielle Bridgewater
5 citations
npj Systems Biology and Applications
Gene Regulatory Network Analysis
4.03
article

Leveraging public AI tools to explore systems biology resources in mathematical modeling

M.K. Jayanthi Kannan, Ming Zhang, Michael L. Blinov, Gabrielle Bridgewater
article en
5 citations

Abstract

Predictive mathematical modeling is an essential part of systems biology and is interconnected with information management. Systems biology information is often stored in specialized formats to facilitate data storage and analysis. These formats are not designed for easy human readability and thus require specialized software to visualize and interpret results. Therefore, comprehending modeling and underlying networks and pathways is contingent on mastering systems biology tools, which is particularly challenging for users with no or little background in data science or system biology. To address this challenge, we investigated the usage of public Artificial Intelligence (AI) tools in exploring systems biology resources in mathematical modeling. We tested public AI's understanding of mathematics in models, related systems biology data, and the complexity of model structures. Our approach can enhance the accessibility of systems biology for non-system biologists and help them understand systems biology without a deep learning curve.

npj Systems Biology and ApplicationsVol. 11(1)
Los Alamos National Laboratory (US), UConn Health (US)
U.S. Department of Energy, Aetna Foundation, National Institutes of Health, National Nuclear Security Administration, Los Alamos National Laboratory
Quality Education
Openalex Percentile: Top 7%
Gene Regulatory Network Analysis
4.03
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