Accurate Neural Network Fine-Tuning Approach for Transferable Ab Initio Energy Prediction across Varying Molecular and Crystalline Scales

Existing machine learning models attempt to predict the energies of large molecules by training small molecules, but eventually fail to retain high accuracy as the errors increase with system size. Through an orbital pairwise decomposition of the correlation energy, a pretrained neural network model on hundred-scale data containing small molecules is demonstrated to be sufficiently transferable for accurately predicting large systems, including molecules and crystals. Our model introduces a residual connection to explicitly learn the pairwise energy corrections, and employs various low-rank retraining techniques to modestly adjust the learned network parameters. We demonstrate that with as few as only one larger molecule retraining the base model originally trained on only small molecules of (H<sub>2</sub>O)<sub>6</sub>, the MP2 correlation energy of the large liquid water (H<sub>2</sub>O)<sub>64</sub> in a periodic supercell can be predicted at chemical accuracy. Similar performance is observed for large protonated clusters and periodic poly glycine chains. A demonstrative application is presented to predict the energy ordering of symmetrically inequivalent sublattices for distinct hydrogen orientations in the ice XV phase. Our work represents an important step forward in the quest for cost-effective, highly accurate and transferable neural network models in quantum chemistry, bridging the electronic structure patterns between small and large systems.

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Publication Details

Journal
Journal of Chemical Theory and Computation
Published
2025-02-04
DOI
https://doi.org/10.1021/acs.jctc.4c01261
Citations
5
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
2.59

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article

Accurate Neural Network Fine-Tuning Approach for Transferable Ab Initio Energy Prediction across Varying Molecular and Crystalline Scales

Zili Zhang, Jun Yang, Wai-Pan Ng
5 citations
Journal of Chemical Theory and Computation
Machine Learning in Materials Science
2.59
article

Accurate Neural Network Fine-Tuning Approach for Transferable Ab Initio Energy Prediction across Varying Molecular and Crystalline Scales

Zili Zhang, Jun Yang, Wai-Pan Ng
article en
5 citations

Abstract

Existing machine learning models attempt to predict the energies of large molecules by training small molecules, but eventually fail to retain high accuracy as the errors increase with system size. Through an orbital pairwise decomposition of the correlation energy, a pretrained neural network model on hundred-scale data containing small molecules is demonstrated to be sufficiently transferable for accurately predicting large systems, including molecules and crystals. Our model introduces a residual connection to explicitly learn the pairwise energy corrections, and employs various low-rank retraining techniques to modestly adjust the learned network parameters. We demonstrate that with as few as only one larger molecule retraining the base model originally trained on only small molecules of (H<sub>2</sub>O)<sub>6</sub>, the MP2 correlation energy of the large liquid water (H<sub>2</sub>O)<sub>64</sub> in a periodic supercell can be predicted at chemical accuracy. Similar performance is observed for large protonated clusters and periodic poly glycine chains. A demonstrative application is presented to predict the energy ordering of symmetrically inequivalent sublattices for distinct hydrogen orientations in the ice XV phase. Our work represents an important step forward in the quest for cost-effective, highly accurate and transferable neural network models in quantum chemistry, bridging the electronic structure patterns between small and large systems.

Journal of Chemical Theory and ComputationVol. 21(4)
QuantumCTek (China) (CN), University of Hong Kong (HK)
Research Grants Council, University Grants Committee
Affordable and clean energy
Openalex Percentile: Top 12%
Machine Learning in Materials Science
2.59
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Accurate Neural Network Fine-Tuning Approach for Transferable Ab Initio Energy Prediction across Varying Molecular and Crystalline Scales — Zili Zhang, Jun Yang, et al. · Journal of Chemical Theory and Computation (2025) | TGRS Research Map | TGRS