Transcriptome sample statistics for the sugar beet root maggot Tetanops myopaeformis ) infecting sugar beet
The sugar beet root maggot (SBRM), <i>Tetanops myopaeformis</i> (von Röder) insect pathogen devastates sugar beet (SB), <i>Beta vulgaris</i> ssp, vulgaris (<i>B. vulgaris</i>), one of only two plants from which significant global raw sugar is produced, $1B, U.S., $4.6 B, globally. Larval SBRMs experiencing F1010 and L19 susceptible or F1016 and F1024 resistant SB responses are RNA sequenced, sampled at time = 0 hours post infection [hpi], 24, 48 and 72 hpi. Transcriptomic analyses determined the number of reads per sample, mapped the transcripts to the recently sequenced SBRM TmSBRM_v1.0 draft genome and identified genes that relate to the resistant and susceptible responses. The RNA-seq study provides data for generating differential expression analyses, yielding an understanding SBRM biology, control strategy development, relationship to model and non-model organisms and aiding sugar beet improvement for stakeholders.
Authors
- Vincent P. Klink (ORCID: https://orcid.org/0000-0002-7167-4032)
- Sudha Acharya (ORCID: https://orcid.org/0000-0003-3572-4140)
- Nadim W. Alkharouf (ORCID: https://orcid.org/0000-0001-6038-0410)
- Chenggen Chu (ORCID: https://orcid.org/0000-0001-6189-5985)
- Muhammad Massub Tehseen (ORCID: https://orcid.org/0000-0003-0429-2269)
Institutions
- Agricultural Research Service (US)
- Beltsville Agricultural Research Center (US)
- Northern Great Plains Research Laboratory (US)
- Towson University (US)
- North Dakota State University (US)
Publication Details
- Journal
- Bioinformation
- Published
- 2024-12-31
- DOI
- https://doi.org/10.6026/9732063002001881
- Primary Topic
- Sugarcane Cultivation and Processing
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- U.S. Department of Agriculture
- Agricultural Research Service