Transcriptome sample statistics for the sugar beet root maggot Tetanops myopaeformis ) infecting sugar beet

The sugar beet root maggot (SBRM), <i>Tetanops myopaeformis</i> (von Röder) insect pathogen devastates sugar beet (SB), <i>Beta vulgaris</i> ssp, vulgaris (<i>B. vulgaris</i>), one of only two plants from which significant global raw sugar is produced, $1B, U.S., $4.6 B, globally. Larval SBRMs experiencing F1010 and L19 susceptible or F1016 and F1024 resistant SB responses are RNA sequenced, sampled at time = 0 hours post infection [hpi], 24, 48 and 72 hpi. Transcriptomic analyses determined the number of reads per sample, mapped the transcripts to the recently sequenced SBRM TmSBRM_v1.0 draft genome and identified genes that relate to the resistant and susceptible responses. The RNA-seq study provides data for generating differential expression analyses, yielding an understanding SBRM biology, control strategy development, relationship to model and non-model organisms and aiding sugar beet improvement for stakeholders.

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Bioinformation
Published
2024-12-31
DOI
https://doi.org/10.6026/9732063002001881
Primary Topic
Sugarcane Cultivation and Processing
Type
article
Field-Weighted Citation Impact
0.00

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article

Transcriptome sample statistics for the sugar beet root maggot Tetanops myopaeformis ) infecting sugar beet

Vincent P. Klink, Sudha Acharya, Nadim W. Alkharouf, Chenggen Chu et al.
Bioinformation
Sugarcane Cultivation and Processing
article

Transcriptome sample statistics for the sugar beet root maggot Tetanops myopaeformis ) infecting sugar beet

Vincent P. Klink, Sudha Acharya, Nadim W. Alkharouf, Chenggen Chu, Muhammad Massub Tehseen
article en

Abstract

The sugar beet root maggot (SBRM), <i>Tetanops myopaeformis</i> (von Röder) insect pathogen devastates sugar beet (SB), <i>Beta vulgaris</i> ssp, vulgaris (<i>B. vulgaris</i>), one of only two plants from which significant global raw sugar is produced, $1B, U.S., $4.6 B, globally. Larval SBRMs experiencing F1010 and L19 susceptible or F1016 and F1024 resistant SB responses are RNA sequenced, sampled at time = 0 hours post infection [hpi], 24, 48 and 72 hpi. Transcriptomic analyses determined the number of reads per sample, mapped the transcripts to the recently sequenced SBRM TmSBRM_v1.0 draft genome and identified genes that relate to the resistant and susceptible responses. The RNA-seq study provides data for generating differential expression analyses, yielding an understanding SBRM biology, control strategy development, relationship to model and non-model organisms and aiding sugar beet improvement for stakeholders.

BioinformationVol. 20(12)
Agricultural Research Service (US), Beltsville Agricultural Research Center (US), Northern Great Plains Research Laboratory (US), Towson University (US), North Dakota State University (US)
U.S. Department of Agriculture, Agricultural Research Service
Openalex Percentile: Top 85%
Sugarcane Cultivation and Processing
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Transcriptome sample statistics for the sugar beet root maggot Tetanops myopaeformis ) infecting sugar beet — Vincent P. Klink, Sudha Acharya, et al. · Bioinformation (2024) | TGRS Research Map | TGRS