The transcriptomic footprint of Mytella strigata: de novo transcriptome assembly of a major invasive species

Mytella strigata, a potentially invasive species native to South America, is rapidly spreading across various aquatic ecosystems around the globe, posing a threat to native mussels. This study presents the first comprehensive de novo transcriptome assembly of M. strigata. We generated 254 million reads, which were processed and assembled using the Trinity assembler, resulting in 60362 transcripts with an N50 of 1,578 bp and over 93-98% completeness, as confirmed by BUSCO analysis with multiple ortho-datasets. A number of databases were used for functional annotation, including UniProt, KEGG, Reactome, InterPro, and eggNOG. Gene Ontology and pathway analyses identified transcripts associated with key biological processes, including those associated with cell signalling, metabolism, stress responses, cancer pathways, and immune regulation. This dataset enriches the bivalve database by advancing the understanding of the adaptive success and evolutionary resilience of this invasive species. The present study provides a fundamental framework for future research on the ecological and evolutionary impacts of this invasive species.

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Publication Details

Journal
Scientific Data
Published
2025-02-03
DOI
https://doi.org/10.1038/s41597-025-04559-y
Citations
2
Primary Topic
Environmental DNA in Biodiversity Studies
Type
article
Field-Weighted Citation Impact
3.43

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article

The transcriptomic footprint of Mytella strigata: de novo transcriptome assembly of a major invasive species

A Gopalakrishnan, Wilson Sebastian, Sandhya Sukumaran, V. G. Vysakh
2 citations
Scientific Data
Environmental DNA in Biodiversity Studies
3.43
article

The transcriptomic footprint of Mytella strigata: de novo transcriptome assembly of a major invasive species

A Gopalakrishnan, Wilson Sebastian, Sandhya Sukumaran, V. G. Vysakh
article en
2 citations

Abstract

Mytella strigata, a potentially invasive species native to South America, is rapidly spreading across various aquatic ecosystems around the globe, posing a threat to native mussels. This study presents the first comprehensive de novo transcriptome assembly of M. strigata. We generated 254 million reads, which were processed and assembled using the Trinity assembler, resulting in 60362 transcripts with an N50 of 1,578 bp and over 93-98% completeness, as confirmed by BUSCO analysis with multiple ortho-datasets. A number of databases were used for functional annotation, including UniProt, KEGG, Reactome, InterPro, and eggNOG. Gene Ontology and pathway analyses identified transcripts associated with key biological processes, including those associated with cell signalling, metabolism, stress responses, cancer pathways, and immune regulation. This dataset enriches the bivalve database by advancing the understanding of the adaptive success and evolutionary resilience of this invasive species. The present study provides a fundamental framework for future research on the ecological and evolutionary impacts of this invasive species.

Scientific DataVol. 12(1)
Mangalore University (IN), Central Marine Fisheries Research Institute (IN)
Indian Council of Agricultural Research, Central Marine Fisheries Research Institute
Life in Land, Zero hunger
Openalex Percentile: Top 11%
Environmental DNA in Biodiversity Studies
3.43
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The transcriptomic footprint of Mytella strigata: de novo transcriptome assembly of a major invasive species — A Gopalakrishnan, Wilson Sebastian, et al. · Scientific Data (2025) | TGRS Research Map | TGRS