Machine learning of slow collective variables and enhanced sampling via spatial techniques

Understanding the long-time dynamics of complex physical processes depends on our ability to recognize patterns. To simplify the description of these processes, we often introduce a set of reaction coordinates, customarily referred to as collective variables (CVs). The quality of these CVs heavily impacts our comprehension of the dynamics, often influencing the estimates of thermodynamics and kinetics from atomistic simulations. Consequently, identifying CVs poses a fundamental challenge in chemical physics. Recently, significant progress was made by leveraging the predictive ability of unsupervised machine learning techniques to determine CVs. Many of these techniques require temporal information to learn slow CVs that correspond to the long timescale behavior of the studied process. Here, however, we specifically focus on techniques that can identify CVs corresponding to the slowest transitions between states without needing temporal trajectories as input, instead of using the spatial characteristics of the data. We discuss the latest developments in this category of techniques and briefly discuss potential directions for thermodynamics-informed spatial learning of slow CVs.

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Publication Details

Journal
Chemical Physics Reviews
Published
2025-02-03
DOI
https://doi.org/10.1063/5.0245177
Citations
13
Primary Topic
Diffusion and Search Dynamics
Type
article
Field-Weighted Citation Impact
10.48
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article

Machine learning of slow collective variables and enhanced sampling via spatial techniques

Jakub Rydzewski, Tuğçe Gökdemir
13 citations
Chemical Physics Reviews
Diffusion and Search Dynamics
10.48
article

Machine learning of slow collective variables and enhanced sampling via spatial techniques

Jakub Rydzewski, Tuğçe Gökdemir
article en
13 citations

Abstract

Understanding the long-time dynamics of complex physical processes depends on our ability to recognize patterns. To simplify the description of these processes, we often introduce a set of reaction coordinates, customarily referred to as collective variables (CVs). The quality of these CVs heavily impacts our comprehension of the dynamics, often influencing the estimates of thermodynamics and kinetics from atomistic simulations. Consequently, identifying CVs poses a fundamental challenge in chemical physics. Recently, significant progress was made by leveraging the predictive ability of unsupervised machine learning techniques to determine CVs. Many of these techniques require temporal information to learn slow CVs that correspond to the long timescale behavior of the studied process. Here, however, we specifically focus on techniques that can identify CVs corresponding to the slowest transitions between states without needing temporal trajectories as input, instead of using the spatial characteristics of the data. We discuss the latest developments in this category of techniques and briefly discuss potential directions for thermodynamics-informed spatial learning of slow CVs.

Chemical Physics ReviewsVol. 6(1)
Nicolaus Copernicus University (PL), FZU ‒ Institute of Physics of the Academy of Sciences of the Czech Republic (CZ)
Openalex Percentile: Top 1%
Diffusion and Search Dynamics
10.48
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