Backbone and side‑chain 1H, 13C and 15N resonance assignments and secondary structure determination of the rhizobial FixJ

The symbiotic nitrogen-fixing bacterium Bradyrhizobium japonicum (B.japonicum) enables high soybean yields with little or no nitrogen fertiliser. A two component regulatory system comprising FixL, a histidine kinase with O<sub>2</sub>-sensing activity, and FixJ, a response regulator, controls the expression of genes involved in nitrogen fixation, such as fixK and nifA. Only under anaerobic conditions, the monophosphate group is transferred from FixL to the N-terminal receiver domain of FixJ (FixJ<sub>N</sub>), which eventually promote the association of the C-terminal effector domain (FixJ<sub>C</sub>) to the promoter regions of the nitrogen-fixation-related genes. Structural biological analyses carried out so far for rhizobial FixJ molecules have proposed a solution structure for FixJ that differs from the crystal structures, in which the two domains are extended. To understand the FixJ activation caused by phosphorylation of the N-terminal domain, which presumably regulates through the interactions between FixJ<sub>N</sub> and FixJ<sub>C</sub>, here we have performed backbone and sidechain resonance assignments of the unphosphorylated state of B. japonicum FixJ.

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Publication Details

Journal
Biomolecular NMR Assignments
Published
2025-02-01
DOI
https://doi.org/10.1007/s12104-025-10221-w
Primary Topic
Legume Nitrogen Fixing Symbiosis
Type
article
Field-Weighted Citation Impact
0.00

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article

Backbone and side‑chain 1H, 13C and 15N resonance assignments and secondary structure determination of the rhizobial FixJ

Pooppadi Maxin Sayeesh, Masaki Mishima, Yutaka Ito, Kohsuke Inomata et al.
Biomolecular NMR Assignments
Legume Nitrogen Fixing Symbiosis
article

Backbone and side‑chain 1H, 13C and 15N resonance assignments and secondary structure determination of the rhizobial FixJ

Pooppadi Maxin Sayeesh, Masaki Mishima, Yutaka Ito, Kohsuke Inomata, Yoshitsugu Shiro, Riki Watanabe, Teppei Ikeya, Ryoji Okubo, Hitomi Sawai, Kaori Kurashima-Ito, Hiroyasu Koteishi, Akio Horikawa, Naoki Hishikura
article en

Abstract

The symbiotic nitrogen-fixing bacterium Bradyrhizobium japonicum (B.japonicum) enables high soybean yields with little or no nitrogen fertiliser. A two component regulatory system comprising FixL, a histidine kinase with O<sub>2</sub>-sensing activity, and FixJ, a response regulator, controls the expression of genes involved in nitrogen fixation, such as fixK and nifA. Only under anaerobic conditions, the monophosphate group is transferred from FixL to the N-terminal receiver domain of FixJ (FixJ<sub>N</sub>), which eventually promote the association of the C-terminal effector domain (FixJ<sub>C</sub>) to the promoter regions of the nitrogen-fixation-related genes. Structural biological analyses carried out so far for rhizobial FixJ molecules have proposed a solution structure for FixJ that differs from the crystal structures, in which the two domains are extended. To understand the FixJ activation caused by phosphorylation of the N-terminal domain, which presumably regulates through the interactions between FixJ<sub>N</sub> and FixJ<sub>C</sub>, here we have performed backbone and sidechain resonance assignments of the unphosphorylated state of B. japonicum FixJ.

Biomolecular NMR AssignmentsVol. 19(1)
Tokyo University of Pharmacy and Life Sciences (JP), University of Hyogo (JP), National Institutes of Natural Sciences (JP), Okazaki National Research Institutes (JP), RIKEN Center for Biosystems Dynamics Research (JP), Institute for Molecular Science (JP), Protein Research Foundation (JP), Nagasaki University (JP), Tokyo Metropolitan University (JP), The University of Osaka (JP)
Tokyo Metropolitan University
Openalex Percentile: Top 99%
Legume Nitrogen Fixing Symbiosis
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