Analytical and numerical approaches to the analysis of progress curves: A methodological comparison

Accurate models of the reaction kinetics of enzymatic reactions are essential for the design of biocatalytic processes. While many experimental studies still build on initial slope analysis, progress curve analysis offers the potential for modelling enzymatic reactions with a significantly lower experimental effort in terms of time and costs, but requires the solution of a dynamic nonlinear optimization problem. There are many different approaches for solving this problem for parameter regression, building on the experimental progress curve data. In order to provide some guidance for selecting an appropriate approach, this study presents a detailed comparison of two analytical and two numerical approaches analysing their strengths and weaknesses on the basis of three case studies. The analytical approaches build on the implicit and explicit integrals of the respective reaction rate equations, while the numerical approaches consider the direct numerical integration of the differential mass balance equations as well as the transformation of the dynamic problem to an algebraic problem by means of spline interpolation of the reaction data. In particular, the dependence of the results on the initial parameter estimates is evaluated, showcasing that the numerical solution with spline interpolation shows a lower dependence on the initial values providing parameter estimates comparable to the analytical approaches, which are however limited in applicability. • Comparison of different tools for progress curve analysis. • 3 case studies: in-silico data, historical data, own experimental data. • Splines show great independence from initial values for parameter estimation.

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Publication Details

Journal
Process Biochemistry
Published
2025-02-01
DOI
https://doi.org/10.1016/j.procbio.2025.01.029
Citations
5
Primary Topic
Advanced Thermodynamics and Statistical Mechanics
Type
article
Field-Weighted Citation Impact
6.62
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article

Analytical and numerical approaches to the analysis of progress curves: A methodological comparison

Thomas Waluga, Mirko Skiborowski, Francesca von Ziegner
5 citations
Process Biochemistry
Advanced Thermodynamics and Statistical Mechanics
6.62
article

Analytical and numerical approaches to the analysis of progress curves: A methodological comparison

Thomas Waluga, Mirko Skiborowski, Francesca von Ziegner
article en
5 citations

Abstract

Accurate models of the reaction kinetics of enzymatic reactions are essential for the design of biocatalytic processes. While many experimental studies still build on initial slope analysis, progress curve analysis offers the potential for modelling enzymatic reactions with a significantly lower experimental effort in terms of time and costs, but requires the solution of a dynamic nonlinear optimization problem. There are many different approaches for solving this problem for parameter regression, building on the experimental progress curve data. In order to provide some guidance for selecting an appropriate approach, this study presents a detailed comparison of two analytical and two numerical approaches analysing their strengths and weaknesses on the basis of three case studies. The analytical approaches build on the implicit and explicit integrals of the respective reaction rate equations, while the numerical approaches consider the direct numerical integration of the differential mass balance equations as well as the transformation of the dynamic problem to an algebraic problem by means of spline interpolation of the reaction data. In particular, the dependence of the results on the initial parameter estimates is evaluated, showcasing that the numerical solution with spline interpolation shows a lower dependence on the initial values providing parameter estimates comparable to the analytical approaches, which are however limited in applicability. • Comparison of different tools for progress curve analysis. • 3 case studies: in-silico data, historical data, own experimental data. • Splines show great independence from initial values for parameter estimation.

Process BiochemistryVol. 151
Universität Hamburg (DE), Hamburg University of Technology (DE)
Openalex Percentile: Top 4%
Advanced Thermodynamics and Statistical Mechanics
6.62
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Analytical and numerical approaches to the analysis of progress curves: A methodological comparison — Thomas Waluga, Mirko Skiborowski, et al. · Process Biochemistry (2025) | TGRS Research Map | TGRS