Computational antidiabetic assessment of Salvia splendens L. polyphenols: SMOTE, ADME, ProTox, docking, and molecular dynamic studies

This study utilizes artificial intelligence and machine learning to enhance drug discovery, focusing on the antidiabetic effects of Salvia splendens leaf extract among the global epidemic of diabetes mellitus. Employing the SMOTE oversampling strategy confirmed that the generated dataset mirrored the activity pattern of the original data. An ADMET analysis of twelve compounds indicated that most complied with Lipinski's rule of five, demonstrating favorable oral bioavailability and safety profiles, except for two compounds, luteolin7- O -(4″,6″-di- O-α- L-rhamno-pyranosyl)- β -D-glucopyranoside and apigenin-7- O-β -D-rutinoside, which exhibited low solubility. Molecular docking studies on α -glucosidase and protein tyrosine phosphatase 1B revealed that compound 4 had the highest binding energy, surpassing that of the standard drug rosiglitazone. Molecular dynamic simulation studies indicated greater stability of docked α -glucosidase compared to tyrosine phosphatase after docking with the promising compounds. Overall, the findings highlight the potential of phenolic compounds from S. splendens as candidates for Type 2 diabetes management. • The study uses AI and machine learning to enhance drug discovery for diabetes treatment. • SMOTE oversampling produced a dataset that accurately reflects the original activity patterns. • Most evaluated compounds met Lipinski's rule of five, indicating good oral bioavailability, while two showed low solubility. • Molecular docking revealed that compound 4 surpassed the standard drug rosiglitazone in binding energy to α-glucosidase. • Dynamic simulations indicated that α-glucosidase maintained greater stability than protein tyrosine phosphatase after docking with the promising compounds.

Authors

Institutions

Publication Details

Journal
Results in Chemistry
Published
2025-01-29
DOI
https://doi.org/10.1016/j.rechem.2025.102081
Citations
7
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
10.53
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Computational antidiabetic assessment of Salvia splendens L. polyphenols: SMOTE, ADME, ProTox, docking, and molecular dynamic studies

Noha Fathallah, Neveen I. Ghali, Taghreed A. Ibrahim, Hatun A. Alomar et al.
7 citations
Results in Chemistry
Computational Drug Discovery Methods
10.53
article

Computational antidiabetic assessment of Salvia splendens L. polyphenols: SMOTE, ADME, ProTox, docking, and molecular dynamic studies

Noha Fathallah, Neveen I. Ghali, Taghreed A. Ibrahim, Hatun A. Alomar, Amany A. Naim, Asmaa A. Mandour, Wafaa M. El Kady
article en
7 citations

Abstract

This study utilizes artificial intelligence and machine learning to enhance drug discovery, focusing on the antidiabetic effects of Salvia splendens leaf extract among the global epidemic of diabetes mellitus. Employing the SMOTE oversampling strategy confirmed that the generated dataset mirrored the activity pattern of the original data. An ADMET analysis of twelve compounds indicated that most complied with Lipinski's rule of five, demonstrating favorable oral bioavailability and safety profiles, except for two compounds, luteolin7- O -(4″,6″-di- O-α- L-rhamno-pyranosyl)- β -D-glucopyranoside and apigenin-7- O-β -D-rutinoside, which exhibited low solubility. Molecular docking studies on α -glucosidase and protein tyrosine phosphatase 1B revealed that compound 4 had the highest binding energy, surpassing that of the standard drug rosiglitazone. Molecular dynamic simulation studies indicated greater stability of docked α -glucosidase compared to tyrosine phosphatase after docking with the promising compounds. Overall, the findings highlight the potential of phenolic compounds from S. splendens as candidates for Type 2 diabetes management. • The study uses AI and machine learning to enhance drug discovery for diabetes treatment. • SMOTE oversampling produced a dataset that accurately reflects the original activity patterns. • Most evaluated compounds met Lipinski's rule of five, indicating good oral bioavailability, while two showed low solubility. • Molecular docking revealed that compound 4 surpassed the standard drug rosiglitazone in binding energy to α-glucosidase. • Dynamic simulations indicated that α-glucosidase maintained greater stability than protein tyrosine phosphatase after docking with the promising compounds.

Results in ChemistryVol. 14
Cairo University (EG), Al-Azhar University (EG), Future University in Egypt (EG), King Saud University (SA), Egyptian Russian University (EG)
Zero hunger
Openalex Percentile: Top 2%
Computational Drug Discovery Methods
10.53
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.