P-1300. Themes to Support Identification of Emerging Infections Diseases
Abstract Background Many outbreaks are first recognized by astute clinicians who notice novel disease presentations, even before statistical anomalies are detected . In our efforts to identify COVID-19 cases using automated surveillance, we noted that the tone and content of clinical notes written early in the pandemic were much different than those written later . We investigated the content of early outbreak notes to identify general patterns that might reflect an emerging disease. Methods This study seeks to identify themes in a sample of clinical notes from Veteran Administration (VA) data. We used a convenience sample of early COVID-19 , early mpox, and CDC Nationally Notifiable Diseases cases as well as inference from a natural language processing (NLP) classifier that the clinical document mentioned communication with a public health authority (as an indicator of concern). These notes were reviewed by a VA infectious disease expert and a VA medical anthropologist with training in global health, the medical explanatory model, and diagnostic decision-making. Thematic analysis was applied to the notes. Results Five main themes were detected in the 100 documents reviewed. 1-Provider discerned something abnormal and included terms such as “unusual presentation”, and “disproportionate” to describe specific symptoms and indicate an element of being surprised. 2-Initiation of protocols for containment or treatment included terms such as “isolate” and “out of concern for… will treat with ” followed by a description of an established protocol for one or more symptoms. 3-Justification of protocol deviation included terms like “insist(ing)” on a type of test or referral to the health authorities. 4-Exposures included terms detailing locations of travel, potentially exposed persons, or locations that may have been sites of initial contraction. 5-Patient voice, as a theme, were described patient fear or agitation. Conclusion Unusual cases can prompt documentation of their exceptionality. Similar patterns may be seen in emerging diseases, such as H5N1, perhaps well before statistical increases are detected in the syndromes they cause. In further research, we will expand on this limited sample and explore NLP systems that could be applied to health records to scan for emerging health threats. Disclosures All Authors: No reported disclosures
Authors
- Barbara Jones (ORCID: https://orcid.org/0000-0002-0971-6887)
- Vanessa Stevens (ORCID: https://orcid.org/0000-0001-8933-5453)
- Andrea Kalvesmaki (ORCID: https://orcid.org/0000-0002-4282-0619)
- Makoto Jones (ORCID: https://orcid.org/0000-0001-5580-6739)
- Kelly Peterson (ORCID: https://orcid.org/0000-0001-7803-6984)
- C. David Dalton
- Joann Vuong
Institutions
- United States Department of Veterans Affairs (US)
- University of Utah (US)
- Veterans Health Administration (US)
- VA Salt Lake City Healthcare System (US)
Publication Details
- Journal
- Open Forum Infectious Diseases
- Published
- 2025-01-29
- DOI
- https://doi.org/10.1093/ofid/ofae631.1481
- Primary Topic
- Viral Infections and Outbreaks Research
- Type
- article
- Field-Weighted Citation Impact
- 0.00