Accurate and efficient representation of intramolecular energy in <i>ab initio</i> generation of crystal structures. Part III: partitioning into torsional groups

We present an approach to reduce this computational cost substantially, based on the partitioning of the molecule into geometrically separated torsional groups, with the dependence of the intramolecular energy and atomic point charges and dependent degrees of freedom on molecular conformation being computed as a linear combination of the contributions of these groups. This can lead to large savings in computational cost without a significant impact on accuracy, as demonstrated in the cases of N-acetyl-para-aminophenol (paracetamol) and methyl 4-hydroxybenzoate (methyl paraben). The approach is also applied successfully to two larger molecules, benzyl [4-(4-methyl-5-[(4-methylphenyl)sulfonyl]-1,3-thiazol-2-yl)phenyl]carbamate (molecule XX from the fifth CSP blind test) and (2S)-2-[4-(3-fluorobenzyloxy)benzylamino]propionamide (safinamide), for which we conduct the first reported CSP study. In both cases, the use of torsional groups results in over 99% reduction in computational cost, which enables the generation of an initial CSP landscape with high-quality structures found within the standard cutoff of 20 kJ mol<sup>-1</sup> for progression to refinement.

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Publication Details

Journal
Acta Crystallographica Section B Structural Science Crystal Engineering and Materials
Published
2025-01-22
DOI
https://doi.org/10.1107/s2052520624010072
Citations
1
Primary Topic
Crystal structures of chemical compounds
Type
article
Field-Weighted Citation Impact
0.54

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article

Accurate and efficient representation of intramolecular energy in ab initio generation of crystal structures. Part III: partitioning into torsional groups

Constantinos C. Pantelides, Y. Zhang, Benjamin I. Tan, David Bowskill et al.
1 citations
Acta Crystallographica Section B Structural Science Crystal Engineering and Materials
Crystal structures of chemical compounds
0.54
article

Accurate and efficient representation of intramolecular energy in ab initio generation of crystal structures. Part III: partitioning into torsional groups

Constantinos C. Pantelides, Y. Zhang, Benjamin I. Tan, David Bowskill, Isaac J. Sugden, Claire S. Adjiman
article en
1 citations

Abstract

We present an approach to reduce this computational cost substantially, based on the partitioning of the molecule into geometrically separated torsional groups, with the dependence of the intramolecular energy and atomic point charges and dependent degrees of freedom on molecular conformation being computed as a linear combination of the contributions of these groups. This can lead to large savings in computational cost without a significant impact on accuracy, as demonstrated in the cases of N-acetyl-para-aminophenol (paracetamol) and methyl 4-hydroxybenzoate (methyl paraben). The approach is also applied successfully to two larger molecules, benzyl [4-(4-methyl-5-[(4-methylphenyl)sulfonyl]-1,3-thiazol-2-yl)phenyl]carbamate (molecule XX from the fifth CSP blind test) and (2S)-2-[4-(3-fluorobenzyloxy)benzylamino]propionamide (safinamide), for which we conduct the first reported CSP study. In both cases, the use of torsional groups results in over 99% reduction in computational cost, which enables the generation of an initial CSP landscape with high-quality structures found within the standard cutoff of 20 kJ mol<sup>-1</sup> for progression to refinement.

Acta Crystallographica Section B Structural Science Crystal Engineering and MaterialsVol. 81(1)
Imperial College London (GB)
Eli Lilly and Company, Imperial College London, University College London, Engineering and Physical Sciences Research Council, Centrum Badań Molekularnych i Makromolekularnych Polskiej Akademii Nauk
Affordable and clean energy
Openalex Percentile: Top 40%
Crystal structures of chemical compounds
0.54
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