Outlier removal in cryo-EM via radial profiles

The process of particle picking, a crucial step in cryo-electron microscopy (cryo-EM) image analysis, often encounters challenges due to outliers, leading to inaccuracies in downstream processing. In response to this challenge, this research introduces an additional automated step to reduce the number of outliers identified by the particle picker. The proposed method enhances both the accuracy and efficiency of particle picking, thereby reducing the overall running time and the necessity for expert intervention in the process. Experimental results demonstrate the effectiveness of the proposed approach in mitigating outlier inclusion and its potential to enhance cryo-EM data analysis pipelines significantly. This work contributes to the ongoing advancement of automated cryo-EM image processing methods, offering novel insights and solutions to challenges in structural biology research.

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Publication Details

Journal
Journal of Structural Biology
Published
2025-01-27
DOI
https://doi.org/10.1016/j.jsb.2025.108172
Citations
1
Primary Topic
Advanced Electron Microscopy Techniques and Applications
Type
article
Field-Weighted Citation Impact
2.55
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article

Outlier removal in cryo-EM via radial profiles

Ayelet Heimowitz, Nir Sharon, Lev Kapnulin
1 citations
Journal of Structural Biology
Advanced Electron Microscopy Techniques and Applications
2.55
article

Outlier removal in cryo-EM via radial profiles

Ayelet Heimowitz, Nir Sharon, Lev Kapnulin
article en
1 citations

Abstract

The process of particle picking, a crucial step in cryo-electron microscopy (cryo-EM) image analysis, often encounters challenges due to outliers, leading to inaccuracies in downstream processing. In response to this challenge, this research introduces an additional automated step to reduce the number of outliers identified by the particle picker. The proposed method enhances both the accuracy and efficiency of particle picking, thereby reducing the overall running time and the necessity for expert intervention in the process. Experimental results demonstrate the effectiveness of the proposed approach in mitigating outlier inclusion and its potential to enhance cryo-EM data analysis pipelines significantly. This work contributes to the ongoing advancement of automated cryo-EM image processing methods, offering novel insights and solutions to challenges in structural biology research.

Journal of Structural BiologyVol. 217(1)
Tel Aviv University (IL), Ariel University (IL)
Openalex Percentile: Top 12%
Advanced Electron Microscopy Techniques and Applications
2.55
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