AOP-networkFinder—a versatile tool for the reconstruction and visualization of Adverse Outcome Pathway networks from AOP-Wiki
The AOP-networkFinder is an open-source application and is available online at aop-networkfinder.no, in the 'Computational Toxicology at Norwegian Institute of Public Health' Zenodo community at DOI 10.5281/zenodo.11068434, in the GitHub repository at github.com/folkehelseinstituttet/AOPnetworkFinder_v1, as well as in a Docker image at hub.docker.com/r/nurre123/aop_network_finder. The software is available under the GNU Affero General Public License (AGPL), v3.0. The tool uses the AOP-Wiki SPARQL endpoint to retrieve AOP data.
Authors
- Hubert Dirven (ORCID: https://orcid.org/0000-0002-7686-9947)
- Torbjørn Rognes (ORCID: https://orcid.org/0000-0002-9329-9974)
- Marvin Martens (ORCID: https://orcid.org/0000-0003-2230-0840)
- Jan P. Lavender (ORCID: https://orcid.org/0000-0002-2052-7702)
- Karine Audouze (ORCID: https://orcid.org/0000-0001-7525-4089)
- Marcin W. Wojewodzic (ORCID: https://orcid.org/0000-0003-2501-5201)
- Nurettin Yarar
Institutions
- University of East Anglia (GB)
- Oslo University Hospital (NO)
- Norwegian Institute of Public Health (NO)
- University of Oslo (NO)
- Université Paris Cité (FR)
- Maastricht University (NL)
- Sorbonne Paris Cité (FR)
- Cancer Registry of Norway (NO)
Publication Details
- Journal
- Bioinformatics Advances
- Published
- 2024-12-26
- DOI
- https://doi.org/10.1093/bioadv/vbaf007
- Citations
- 8
- Primary Topic
- Computational Drug Discovery Methods
- Type
- article
- Field-Weighted Citation Impact
- 2.89
Funders
- European Commission
- Universitetet i Oslo
- HORIZON EUROPE Framework Programme
- Norwegian Institute of Public Health