[Statistical methods for extremely unbalanced data in genome-wide association study (2)].

Extremely unbalanced data refers to datasets with independent or dependent variables showing severe imbalances in proportions, which might lead to deviation of classical test statistics from theoretical distribution and difficulties in controlling type Ⅰ error. The increased availability of genome-wide resources from large population cohorts has highlighted the growing demand for efficient and accurate statistical methods for the process of extremely unbalanced data to improve the development of genetic statistical methods. This paper introduces two widely used correction methods in current genome-wide association study for extremely unbalanced data, i.e. Firth correction and saddle point approximation, describes their effectiveness in controlling type Ⅰ errors confirmed by simulation experiments, finally, and summarizes the commonly used software for extremely unbalanced genomic data to provide theoretical reference and suggestion for its application for the statistical analysis on extremely unbalanced data in future.

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Publication Details

Journal
PubMed
Published
2025-01-10
DOI
https://doi.org/10.3760/cma.j.cn112338-20240712-00422
Primary Topic
Genetic Associations and Epidemiology
Type
article
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[Statistical methods for extremely unbalanced data in genome-wide association study (2)].

Z W Zhang, Fang Shao, Wenjian Bi, Run Zhang et al.
PubMed
Genetic Associations and Epidemiology
article

[Statistical methods for extremely unbalanced data in genome-wide association study (2)].

Z W Zhang, Fang Shao, Wenjian Bi, Run Zhang, Yinze Wei, Ni Xie, Feng Chen, Yang Zhao
article en

Abstract

Extremely unbalanced data refers to datasets with independent or dependent variables showing severe imbalances in proportions, which might lead to deviation of classical test statistics from theoretical distribution and difficulties in controlling type Ⅰ error. The increased availability of genome-wide resources from large population cohorts has highlighted the growing demand for efficient and accurate statistical methods for the process of extremely unbalanced data to improve the development of genetic statistical methods. This paper introduces two widely used correction methods in current genome-wide association study for extremely unbalanced data, i.e. Firth correction and saddle point approximation, describes their effectiveness in controlling type Ⅰ errors confirmed by simulation experiments, finally, and summarizes the commonly used software for extremely unbalanced genomic data to provide theoretical reference and suggestion for its application for the statistical analysis on extremely unbalanced data in future.

PubMedVol. 46(1)
Peking University (CN), Office of Readiness and Response (US), Changzhou No.2 People's Hospital (CN), Nanjing Medical University (CN)
Genetic Associations and Epidemiology
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[Statistical methods for extremely unbalanced data in genome-wide association study (2)]. — Z W Zhang, Fang Shao, et al. · PubMed (2025) | TGRS Research Map | TGRS