Sphae: an automated toolkit for predicting phage therapy candidates from sequencing data
Sphae source code is freely available at https://github.com/linsalrob/sphae, with installation supported on Conda, PyPi, Docker containers.
Authors
- Cole Souza (ORCID: https://orcid.org/0009-0009-2294-0363)
- Vijini Mallawaarachchi (ORCID: https://orcid.org/0000-0002-2651-8719)
- Susanna R. Grigson (ORCID: https://orcid.org/0000-0003-4738-3451)
- Michael J. Roach (ORCID: https://orcid.org/0000-0003-1488-5148)
- Bhavya Papudeshi (ORCID: https://orcid.org/0000-0001-5359-3100)
- Laura K. Inglis (ORCID: https://orcid.org/0000-0001-7919-8563)
- Sarah K. Giles (ORCID: https://orcid.org/0000-0002-4395-060X)
- Robert A. Edwards (ORCID: https://orcid.org/0000-0001-8383-8949)
- George Bouras (ORCID: https://orcid.org/0000-0002-5885-4186)
- Clarice Harker (ORCID: https://orcid.org/0009-0008-6802-6799)
- Anca Mara Segall (ORCID: https://orcid.org/0000-0002-8454-5248)
- Lance Boling (ORCID: https://orcid.org/0009-0008-2505-4757)
- Elizabeth A. Dinsdale (ORCID: https://orcid.org/0000-0002-2177-203X)
- Alejandro A. Vega (ORCID: https://orcid.org/0000-0001-9733-0468)
- Ana G. Cobián-Güemes (ORCID: https://orcid.org/0000-0002-0755-5864)
- Abbey Hutton (ORCID: https://orcid.org/0000-0002-2474-1327)
- Hamza Hajama (ORCID: https://orcid.org/0000-0002-5125-4030)
- A.B. Tarasenko (ORCID: https://orcid.org/0009-0003-4283-2374)
Institutions
- University of San Diego (US)
- University of California, Los Angeles (US)
- Flinders University (AU)
- San Diego State University (US)
- University of California San Diego (US)
- Basil Hetzel Institute (AU)
- Adelaide Institute for Sleep Health (AU)
- The University of Adelaide (AU)
Publication Details
- Journal
- Bioinformatics Advances
- Published
- 2024-12-26
- DOI
- https://doi.org/10.1093/bioadv/vbaf004
- Citations
- 13
- Primary Topic
- Bacteriophages and microbial interactions
- Type
- article
- Field-Weighted Citation Impact
- 5.97
Funders
- National Computational Infrastructure
- Australian Government
- Flinders University
- Australian Research Data Commons
- National Institutes of Health
- National Cancer Institute
- National Institute of Diabetes and Digestive and Kidney Diseases