Evaluating the Impact of Variants on Translation Initiation Sites for Accurate Identification of Functional Open Reading Frames (ORFs)

VarTIS is a computational tool that utilizes multi-branch Convolutional Neural Networks (CNNs) to analyze genetic variants near Translation Initiation Sites (TIS), assessing their impact on translation efficiency. By comparing variant densities in protein-coding regions with adjacent untranslated regions, VarTIS helps identify potential disruptions in the proper identification of functional Open Reading Frames (ORFs).

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Publication Details

Published
2024-12-03
DOI
https://doi.org/10.1109/bibm62325.2024.10822565
Primary Topic
Natural Language Processing Techniques
Type
article
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article

Evaluating the Impact of Variants on Translation Initiation Sites for Accurate Identification of Functional Open Reading Frames (ORFs)

Vasiliki Efstathiou, Nikos Perdikopanis, Thanos Lakes
Natural Language Processing Techniques
article

Evaluating the Impact of Variants on Translation Initiation Sites for Accurate Identification of Functional Open Reading Frames (ORFs)

Vasiliki Efstathiou, Nikos Perdikopanis, Thanos Lakes
article en

Abstract

VarTIS is a computational tool that utilizes multi-branch Convolutional Neural Networks (CNNs) to analyze genetic variants near Translation Initiation Sites (TIS), assessing their impact on translation efficiency. By comparing variant densities in protein-coding regions with adjacent untranslated regions, VarTIS helps identify potential disruptions in the proper identification of functional Open Reading Frames (ORFs).

National and Kapodistrian University of Athens (GR)
Quality Education
Openalex Percentile: Top 77%
Natural Language Processing Techniques
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