Human housekeeping genes interrogated with Gini-index and GTEx datasets

Housekeeping genes are stably expressed genes that are essential for molecular and systems biology studies. We used Gini index profiles to discover housekeeping genes in human subjects, in addition to major tissue subtypes. We investigated tissue-specific housekeeping genes using GTEx datasets from over 16,000 normal tissue samples. As a result, we identified 529 housekeeping genes that are conserved across 27 major organs. The expression variations of these housekeeping genes were then compared between male and female participants for further sexual dimorphism studies. This research suggests alternate sets of human housekeeping protein-coding genes that exhibit more consistent expression profiles.

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Published
2024-12-03
DOI
https://doi.org/10.1109/bibm62325.2024.10822433
Primary Topic
Machine Learning and Data Classification
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article
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article

Human housekeeping genes interrogated with Gini-index and GTEx datasets

Wen‐chang Lin
Machine Learning and Data Classification
article

Human housekeeping genes interrogated with Gini-index and GTEx datasets

Wen‐chang Lin
article en

Abstract

Housekeeping genes are stably expressed genes that are essential for molecular and systems biology studies. We used Gini index profiles to discover housekeeping genes in human subjects, in addition to major tissue subtypes. We investigated tissue-specific housekeeping genes using GTEx datasets from over 16,000 normal tissue samples. As a result, we identified 529 housekeeping genes that are conserved across 27 major organs. The expression variations of these housekeeping genes were then compared between male and female participants for further sexual dimorphism studies. This research suggests alternate sets of human housekeeping protein-coding genes that exhibit more consistent expression profiles.

Institute of Biomedical Sciences, Academia Sinica (TW)
Gender equality
Openalex Percentile: Top 77%
Machine Learning and Data Classification
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