Concept-based Biomedical Text Expansion via Large Language Models

Concept-based approaches have emerged as a promising solution to enhance search accuracy in biomedical information retrieval (BIR). These approaches aim to bridge the semantic gap between user queries and document content by mapping both to a shared conceptual space. However, existing methods often struggle with limited concept coverage and inaccurate concept mapping. Recent advancements in large language models (LLMs) have demonstrated their extensive concept coverage and ability to accurately connect text with relevant concepts, showing potential in addressing these challenges. Motivated by these findings, we propose Concept-based Biomedical Text Expansion (CBTE), a novel method that leverages LLMs to identify relevant concepts in both queries and documents. CBTE then uses these concepts to expand queries and documents. The relevance between expanded queries and documents is evaluated using the BM25 sparse retrieval framework. To validate CBTE’s effectiveness, we conducted comprehensive experiments on two well-known biomedical datasets, NFCorpus and Trec-Covid. The results indicate that CBTE significantly outperforms existing baselines.

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Publication Details

Published
2024-12-03
DOI
https://doi.org/10.1109/bibm62325.2024.10822184
Primary Topic
Biomedical Text Mining and Ontologies
Type
article
Field-Weighted Citation Impact
0.00

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article

Concept-based Biomedical Text Expansion via Large Language Models

Xinhui Tu, Chenchen Zhou, Weizhong Zhao, Rui Fan et al.
Biomedical Text Mining and Ontologies
article

Concept-based Biomedical Text Expansion via Large Language Models

Xinhui Tu, Chenchen Zhou, Weizhong Zhao, Rui Fan, Cong Guo, Tingting He, Yinghao Xiong
article en

Abstract

Concept-based approaches have emerged as a promising solution to enhance search accuracy in biomedical information retrieval (BIR). These approaches aim to bridge the semantic gap between user queries and document content by mapping both to a shared conceptual space. However, existing methods often struggle with limited concept coverage and inaccurate concept mapping. Recent advancements in large language models (LLMs) have demonstrated their extensive concept coverage and ability to accurately connect text with relevant concepts, showing potential in addressing these challenges. Motivated by these findings, we propose Concept-based Biomedical Text Expansion (CBTE), a novel method that leverages LLMs to identify relevant concepts in both queries and documents. CBTE then uses these concepts to expand queries and documents. The relevance between expanded queries and documents is evaluated using the BM25 sparse retrieval framework. To validate CBTE’s effectiveness, we conducted comprehensive experiments on two well-known biomedical datasets, NFCorpus and Trec-Covid. The results indicate that CBTE significantly outperforms existing baselines.

Central China Normal University (CN)
National Natural Science Foundation of China
Quality Education
Openalex Percentile: Top 78%
Biomedical Text Mining and Ontologies
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Concept-based Biomedical Text Expansion via Large Language Models — Xinhui Tu, Chenchen Zhou, et al. · (2024) | TGRS Research Map | TGRS