Forging the iron‐net: Towards a quantitative understanding of microbial communities via siderophore‐mediated interactions

Iron is a critical yet limited nutrient for microbial growth. To scavenge iron, most microbes produce siderophores-diverse small molecules with high iron affinities. Different siderophores are specifically recognized and uptaken by corresponding recognizers, enabling targeted interventions and intriguing cheater-producer dynamics. We propose constructing a comprehensive iron interaction network, or "iron-net", across the microbial world. Such a network offers the potential for precise manipulation of the microbiota, with conceivable applications in medicine, agriculture, and industry as well as advancing microbial ecology and evolution theories. Previously, our successful construction of an iron-net in the <i>Pseudomonas</i> genus demonstrated the feasibility of coevolution-inspired digital siderophore-typing. Enhanced by machine learning techniques and expanding sequencing data, forging such an iron-net calls for multidisciplinary collaborations and holds significant promise in addressing critical challenges in microbial communities.

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Publication Details

Journal
Quantitative Biology
Published
2025-01-10
DOI
https://doi.org/10.1002/qub2.84
Citations
7
Primary Topic
Bacterial biofilms and quorum sensing
Type
article
Field-Weighted Citation Impact
5.64

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article

Forging the iron‐net: Towards a quantitative understanding of microbial communities via siderophore‐mediated interactions

Ruolin He, Yinxiang Li, Jiqi Shao, Shaohua Gu et al.
7 citations
Quantitative Biology
Bacterial biofilms and quorum sensing
5.64
article

Forging the iron‐net: Towards a quantitative understanding of microbial communities via siderophore‐mediated interactions

Ruolin He, Yinxiang Li, Jiqi Shao, Shaohua Gu, Di Zhang, Fanhao Wang, Zhiyuan Li, Yuanzhe Shao, Ruichen Xu, Linlong Yu, Yanzhao Wu, Zhong Wei, Ningbo Xi, Guanyue Xiong, Peng Guo, Zeyang Qu
article en
7 citations

Abstract

Iron is a critical yet limited nutrient for microbial growth. To scavenge iron, most microbes produce siderophores-diverse small molecules with high iron affinities. Different siderophores are specifically recognized and uptaken by corresponding recognizers, enabling targeted interventions and intriguing cheater-producer dynamics. We propose constructing a comprehensive iron interaction network, or "iron-net", across the microbial world. Such a network offers the potential for precise manipulation of the microbiota, with conceivable applications in medicine, agriculture, and industry as well as advancing microbial ecology and evolution theories. Previously, our successful construction of an iron-net in the <i>Pseudomonas</i> genus demonstrated the feasibility of coevolution-inspired digital siderophore-typing. Enhanced by machine learning techniques and expanding sequencing data, forging such an iron-net calls for multidisciplinary collaborations and holds significant promise in addressing critical challenges in microbial communities.

Quantitative BiologyVol. 13(2)
Nanjing Agricultural University (CN), Shandong University (CN), Peking University (CN), The Synergetic Innovation Center for Advanced Materials (CN), Center for Life Sciences (CN), Taiyuan University of Technology (CN)
National Natural Science Foundation of China, Center for Life Sciences
Zero hunger
Openalex Percentile: Top 4%
Bacterial biofilms and quorum sensing
5.64
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