BenchAMRking: a Galaxy-based platform for illustrating the major issues associated with current antimicrobial resistance (AMR) gene prediction workflows
BenchAMRking is a Galaxy-based comparison platform where users can access, visualise, and explore some of the major discrepancies associated with AMR gene prediction from microbial WGS data.
Authors
- Benjamin P. Howden (ORCID: https://orcid.org/0000-0003-0237-1473)
- Saskia Hiltemann (ORCID: https://orcid.org/0000-0003-3803-468X)
- Catherine D. Carrillo
- John P. Hays (ORCID: https://orcid.org/0000-0001-9183-4497)
- Amrita Bharat (ORCID: https://orcid.org/0000-0003-4171-9436)
- Norelle L. Sherry (ORCID: https://orcid.org/0000-0002-7789-8360)
- Bert Bogaerts (ORCID: https://orcid.org/0000-0003-2806-4033)
- Leonid Chindelevitch (ORCID: https://orcid.org/0000-0002-6619-6013)
- Nikolaos Strepis (ORCID: https://orcid.org/0000-0002-0997-8430)
- Kevin Vanneste (ORCID: https://orcid.org/0009-0000-4051-0628)
- Kristy Horan (ORCID: https://orcid.org/0000-0003-3960-1519)
- Torsten Seemann (ORCID: https://orcid.org/0000-0001-6046-610X)
- Dennis Dollée (ORCID: https://orcid.org/0009-0002-3820-7413)
- Andrew Stubbs (ORCID: https://orcid.org/0000-0001-9817-9982)
- Donny Vrins (ORCID: https://orcid.org/0009-0009-2054-8595)
Institutions
- Canadian Food Inspection Agency (CA)
- University of Freiburg (DE)
- The University of Melbourne (AU)
- Public Health Agency of Canada (CA)
- Erasmus MC (NL)
- Peter Doherty Institute (AU)
- Sciensano (Belgium) (BE)
- Imperial College London (GB)
- Erasmus University Rotterdam (NL)
Publication Details
- Journal
- BMC Genomics
- Published
- 2025-01-10
- DOI
- https://doi.org/10.1186/s12864-024-11158-5
- Citations
- 2
- Primary Topic
- Antibiotic Resistance in Bacteria
- Type
- article
- Field-Weighted Citation Impact
- 0.59
Funders
- Public Health Agency of Canada
- Joint Programming Initiative on Antimicrobial Resistance
- Public Health Agency
- ZonMw
- Medical Research Council