Fluid biospecimens and genetic data collection and dissemination: new pipelines to serve the dementia research community from the UCSF Memory and Aging Center

Abstract Background Collection, storage, and distribution of human fluid biospecimens in a scientifically rigorous manner is challenging. It requires physical space availability and robust infrastructure. Nonetheless, it is key to contribute to research in Alzheimer’s Disease and Related Disorders, including Frontotemporal Dementia (FTD). These specimens facilitate fluid biomarker discovery and validation studies. At the UCSF Memory and Aging center (MAC) we support 31 protocols, from both clinical and observational studies, including international ones (e.g. ALLFTD). Besides specimens, our Biospecimens and Genetics Program (BsGP) stores and shares fluid biomarker and genetic data associated with specimens collected under such studies. Here, we aim to report results of a single center’s operational efforts to create a platform for biospecimens and biospecimens‐related data management that functions seamlessly allowing for collaborative research. Method Over the past three years, we developed infrastructure to support biospecimen research, both locally and internationally. Our program is led by a PhD neuroscientist and supported by four faculty members. We have a dedicated data manager, an administrative coordinator, and five members in our processing lab. We doubled our laboratory equipment (acquired two centrifuges) and implemented a superior version of our Laboratory Information Management System. We maintained and expanded partnerships with entities like UCSF‐IHG, UCLA, NCRAD, ATRI. We strengthened our technological infrastructure by hiring a dedicated programmer. We transitioned towards a de‐centralized biobanking strategy. Result During 2023, the BsGP supported 16 investigators who submitted 20 genetic data requests. We supported our Fibroblast, Genetic, and Neuropathology Cores by providing quarterly customized genetic datasets. Our BsGP Committee reviewed 31 biospecimens requests, including 11 from non‐UCSF affiliated investigators (from academic institutions and industry). They all required heavily leveraging internal resources to provide additional clinical and biomarker data. We began to build a bespoke bioinformatics solution for our program: SYNC. SYNC will facilitate tracking and searching for biospecimens (and associated fluid biomarker and genetic data) easily, so that accessing existing resources is not a roadblock for research. Conclusion The MAC BsGP can serve as a model for centers interested in improving their biospecimen research programs, which requires dedicated investments in infrastructure, especially hiring and supporting qualified personnel.

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Publication Details

Journal
Alzheimer s & Dementia
Published
2024-12-01
DOI
https://doi.org/10.1002/alz.091555
Primary Topic
Health, Environment, Cognitive Aging
Type
article
Field-Weighted Citation Impact
0.00
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article

Fluid biospecimens and genetic data collection and dissemination: new pipelines to serve the dementia research community from the UCSF Memory and Aging Center

Lawren VandeVrede, Julio C. Rojas, Hilary W. Heuer, Renaud La Joie et al.
Alzheimer s & Dementia
Health, Environment, Cognitive Aging
article

Fluid biospecimens and genetic data collection and dissemination: new pipelines to serve the dementia research community from the UCSF Memory and Aging Center

Lawren VandeVrede, Julio C. Rojas, Hilary W. Heuer, Renaud La Joie, Adam L. Boxer, Ana Tyler, Rose George, Bruce L. Miller, Kaitlin Blackstone Casaletto, Karen Smith, Gil D. Rabinovici, Jennifer S. Yokoyama, Taylor Young, Mary Koestler, Eliana Marisa Ramos, Argentina Lario Lago, Julia D Webb
article en

Abstract

Abstract Background Collection, storage, and distribution of human fluid biospecimens in a scientifically rigorous manner is challenging. It requires physical space availability and robust infrastructure. Nonetheless, it is key to contribute to research in Alzheimer’s Disease and Related Disorders, including Frontotemporal Dementia (FTD). These specimens facilitate fluid biomarker discovery and validation studies. At the UCSF Memory and Aging center (MAC) we support 31 protocols, from both clinical and observational studies, including international ones (e.g. ALLFTD). Besides specimens, our Biospecimens and Genetics Program (BsGP) stores and shares fluid biomarker and genetic data associated with specimens collected under such studies. Here, we aim to report results of a single center’s operational efforts to create a platform for biospecimens and biospecimens‐related data management that functions seamlessly allowing for collaborative research. Method Over the past three years, we developed infrastructure to support biospecimen research, both locally and internationally. Our program is led by a PhD neuroscientist and supported by four faculty members. We have a dedicated data manager, an administrative coordinator, and five members in our processing lab. We doubled our laboratory equipment (acquired two centrifuges) and implemented a superior version of our Laboratory Information Management System. We maintained and expanded partnerships with entities like UCSF‐IHG, UCLA, NCRAD, ATRI. We strengthened our technological infrastructure by hiring a dedicated programmer. We transitioned towards a de‐centralized biobanking strategy. Result During 2023, the BsGP supported 16 investigators who submitted 20 genetic data requests. We supported our Fibroblast, Genetic, and Neuropathology Cores by providing quarterly customized genetic datasets. Our BsGP Committee reviewed 31 biospecimens requests, including 11 from non‐UCSF affiliated investigators (from academic institutions and industry). They all required heavily leveraging internal resources to provide additional clinical and biomarker data. We began to build a bespoke bioinformatics solution for our program: SYNC. SYNC will facilitate tracking and searching for biospecimens (and associated fluid biomarker and genetic data) easily, so that accessing existing resources is not a roadblock for research. Conclusion The MAC BsGP can serve as a model for centers interested in improving their biospecimen research programs, which requires dedicated investments in infrastructure, especially hiring and supporting qualified personnel.

Alzheimer s & DementiaVol. 20(S2)
University of California, Los Angeles (US), University of California, San Francisco (US), University Memory and Aging Center (US)
Industry, innovation and infrastructure
Openalex Percentile: Top 65%
Health, Environment, Cognitive Aging
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