Unlocking Tau PET Accessibility: a Machine Learning‐Based Prediction of Tau Pathology from Plasma, MRI and Clinical Variables

Abstract Background A key characteristic of Alzheimer’s disease (AD) is cerebral aggregation of tau. These aggregates can be quantified and localized with positron emission tomography (PET), which improves the diagnostic and prognostic work‐up of AD. However, tau‐PET is expensive and not available in clinical settings globally. With emerging disease‐modifying therapies for AD, comprehensive and accessible ways to estimate the load and distribution of tau pathology are becoming crucial. Here, we address this problem with machine learning (ML) models trained to predict tau‐PET outcomes from accessible features only (clinical variables, plasma biomarkers and MRI). Method The study included 1195 participants from the BioFINDER‐2 (BF2) cohort. BF2 was split into 80% train and 20% test sets. We created a rigorous ML pipeline that, with 10‐fold cross‐validation, evaluated different feature selection steps and estimators in a combined grid‐search and Bayesian optimization set‐up (Figure 1). The three variable blocks (clinical, plasma and MRI) were used as features (together and separately) to predict two tau‐PET characteristics: 1) tau load in the temporal cortex 2) hemispheric asymmetry of temporal tau load in tau positive participants (as an example of clinically relevant spatial information). External validation was performed in the BF2 test set, BioFINDER‐1 (BF1, n=147), ADNI (n=136), OASIS (n=46) and A4 (n=45). Note that ADNI, OASIS and A4 did not include plasma biomarkers. Result Feature combinations including plasma (particularly plasma p‐tau217) resulted in the best prediction of tau‐PET load (Figure 2). The best performing model was a combination of plasma and MRI variables in a CatBoost regressor, which achieved SUVR mean absolute error (MAE) = 0.155 and R‐squared = 0.700 on unseen data. For prediction of hemispheric asymmetry, models using MRI features performed best, and regions in the temporal lobe had the greatest contribution to the models (Figure 3). Top performance on unseen data was laterality index MAE = 6.74 and R‐squared = 0.423 in a SVR model including MRI and clinical variables. Conclusion Generalizable machine learning models reveal the potential in predicting tau PET from more accessible variables (particularly plasma biomarkers and MRI), which can unlock global accessibility to one of the most informative in vivo diagnostic techniques of AD.

Authors

Institutions

Publication Details

Journal
Alzheimer s & Dementia
Published
2024-12-01
DOI
https://doi.org/10.1002/alz.089129
Primary Topic
Medical Imaging Techniques and Applications
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Unlocking Tau PET Accessibility: a Machine Learning‐Based Prediction of Tau Pathology from Plasma, MRI and Clinical Variables

Nicholas James Ashton, Alexa Pichet Binette, Richard A. I. Bethlehem, Sebastian Palmqvist et al.
Alzheimer s & Dementia
Medical Imaging Techniques and Applications
article

Unlocking Tau PET Accessibility: a Machine Learning‐Based Prediction of Tau Pathology from Plasma, MRI and Clinical Variables

Nicholas James Ashton, Alexa Pichet Binette, Richard A. I. Bethlehem, Sebastian Palmqvist, Rik Ossenkoppele, Erik Stomrud, Olof T. Strandberg, Ruben Smith, Niklas Mattsson, Oskar Hansson, Jakob Seidlitz, Kalle Åström, Shorena Janelidze, Jacob W. Vogel, Linda Karlsson, Ida Arvidsson, Kaj Blennow
article en

Abstract

Abstract Background A key characteristic of Alzheimer’s disease (AD) is cerebral aggregation of tau. These aggregates can be quantified and localized with positron emission tomography (PET), which improves the diagnostic and prognostic work‐up of AD. However, tau‐PET is expensive and not available in clinical settings globally. With emerging disease‐modifying therapies for AD, comprehensive and accessible ways to estimate the load and distribution of tau pathology are becoming crucial. Here, we address this problem with machine learning (ML) models trained to predict tau‐PET outcomes from accessible features only (clinical variables, plasma biomarkers and MRI). Method The study included 1195 participants from the BioFINDER‐2 (BF2) cohort. BF2 was split into 80% train and 20% test sets. We created a rigorous ML pipeline that, with 10‐fold cross‐validation, evaluated different feature selection steps and estimators in a combined grid‐search and Bayesian optimization set‐up (Figure 1). The three variable blocks (clinical, plasma and MRI) were used as features (together and separately) to predict two tau‐PET characteristics: 1) tau load in the temporal cortex 2) hemispheric asymmetry of temporal tau load in tau positive participants (as an example of clinically relevant spatial information). External validation was performed in the BF2 test set, BioFINDER‐1 (BF1, n=147), ADNI (n=136), OASIS (n=46) and A4 (n=45). Note that ADNI, OASIS and A4 did not include plasma biomarkers. Result Feature combinations including plasma (particularly plasma p‐tau217) resulted in the best prediction of tau‐PET load (Figure 2). The best performing model was a combination of plasma and MRI variables in a CatBoost regressor, which achieved SUVR mean absolute error (MAE) = 0.155 and R‐squared = 0.700 on unseen data. For prediction of hemispheric asymmetry, models using MRI features performed best, and regions in the temporal lobe had the greatest contribution to the models (Figure 3). Top performance on unseen data was laterality index MAE = 6.74 and R‐squared = 0.423 in a SVR model including MRI and clinical variables. Conclusion Generalizable machine learning models reveal the potential in predicting tau PET from more accessible variables (particularly plasma biomarkers and MRI), which can unlock global accessibility to one of the most informative in vivo diagnostic techniques of AD.

Alzheimer s & DementiaVol. 20(S2)
Statistics Sweden (SE), King's College London (GB), Lund University (SE), University of Cambridge (GB), Science for Life Laboratory (SE), Sahlgrenska University Hospital (SE), Amsterdam Neuroscience (NL), Skåne University Hospital (SE), Lifespan (US), Amsterdam University Medical Centers (NL), University of Pennsylvania (US), University of Gothenburg (SE)
Openalex Percentile: Top 58%
Medical Imaging Techniques and Applications
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.