A Computational DFT Insight into the Optimized Structure, Electronic Structures, Spectroscopic Analysis, and Thermodynamic Parameters of the Cytosine Molecule

The optimized structure of the Cytosine molecule was achieved in 12 steps, yielding an optimization energy of -10749.84 eV. The HOMO-LUMO energy gap of 4.94 eV indicates chemical stability. The oxygen atom exhibits the most negative potential and the hydrogen atom shows the most positive potential. The density of states reveals an energy gap of 4.92 eV, confirming equivalent orbital energy levels. Calculated hardness (2.47 eV) and softness (0.41 eV-1) suggest stability and polarizability. The chemical potential is -3.97 eV, and the electronegativity is 3.97 eV. The electrophilicity index of 3.19 eV indicates a strong electrophilic behavior. Mulliken charge analysis identifies H13 with the highest positive charge and N5 with the highest negative charge. Vibrational analysis shows C-H vibrations at 3100-3300 cm-1, N-H at 3500-3700 cm-1, and C=O at 1771.10 cm-1. Thermodynamic properties such as heat capacity, internal energy, enthalpy, and entropy increase with temperature, while Gibbs free energy decreases.

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Publication Details

Journal
Amrit Research Journal
Published
2024-12-31
DOI
https://doi.org/10.3126/arj.v5i1.73566
Citations
1
Primary Topic
DNA and Nucleic Acid Chemistry
Type
article
Field-Weighted Citation Impact
0.23
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article

A Computational DFT Insight into the Optimized Structure, Electronic Structures, Spectroscopic Analysis, and Thermodynamic Parameters of the Cytosine Molecule

Basanta Kumar Neupane, Keshav Basnet, Roshika Uprety, Krishna Bahadur et al.
1 citations
Amrit Research Journal
DNA and Nucleic Acid Chemistry
0.23
article

A Computational DFT Insight into the Optimized Structure, Electronic Structures, Spectroscopic Analysis, and Thermodynamic Parameters of the Cytosine Molecule

Basanta Kumar Neupane, Keshav Basnet, Roshika Uprety, Krishna Bahadur, Pima Gharti Magar
article en
1 citations

Abstract

The optimized structure of the Cytosine molecule was achieved in 12 steps, yielding an optimization energy of -10749.84 eV. The HOMO-LUMO energy gap of 4.94 eV indicates chemical stability. The oxygen atom exhibits the most negative potential and the hydrogen atom shows the most positive potential. The density of states reveals an energy gap of 4.92 eV, confirming equivalent orbital energy levels. Calculated hardness (2.47 eV) and softness (0.41 eV-1) suggest stability and polarizability. The chemical potential is -3.97 eV, and the electronegativity is 3.97 eV. The electrophilicity index of 3.19 eV indicates a strong electrophilic behavior. Mulliken charge analysis identifies H13 with the highest positive charge and N5 with the highest negative charge. Vibrational analysis shows C-H vibrations at 3100-3300 cm-1, N-H at 3500-3700 cm-1, and C=O at 1771.10 cm-1. Thermodynamic properties such as heat capacity, internal energy, enthalpy, and entropy increase with temperature, while Gibbs free energy decreases.

Amrit Research JournalVol. 5(1)
Tribhuvan University (NP)
Affordable and clean energy
Openalex Percentile: Top 40%
DNA and Nucleic Acid Chemistry
0.23
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