Nanopore decoding with speed and versatility for data storage

Source code for our soft decoder and data used to generate figures is available publicly in the Github repository https://github.com/dna-storage/hedges-soft-decoder (10.5281/zenodo.11454877). All raw FAST5/FASTQ data are available at 10.5281/zenodo.11985454 and 10.5281/zenodo.12014515.

Authors

Kevin Volkel (ORCID: https://orcid.org/0000-0002-5200-5909)
Paul W. Hook (ORCID: https://orcid.org/0000-0002-3912-1999)
James Tuck (ORCID: https://orcid.org/0000-0001-8975-0294)
Winston Timp (ORCID: https://orcid.org/0000-0003-2083-6027)
Albert J. Keung

Institutions

North Carolina State University (US)
Johns Hopkins University (US)
Johns Hopkins Medicine (US)

Publication Details

Journal: Bioinformatics
Published: 2024-12-26
DOI: https://doi.org/10.1093/bioinformatics/btaf006
Citations: 3
Primary Topic: DNA and Biological Computing
Type: article
Field-Weighted Citation Impact: 1.17

Funders

National Science Foundation

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article

Nanopore decoding with speed and versatility for data storage

Kevin Volkel, Paul W. Hook, James Tuck, Winston Timp et al.

Dec 26, 2024

3 citations

Bioinformatics

DNA and Biological Computing

1.17

article

Nanopore decoding with speed and versatility for data storage

Kevin Volkel, Paul W. Hook, James Tuck, Winston Timp, Albert J. Keung

December 26, 2024article en

3 citations

Abstract

Source code for our soft decoder and data used to generate figures is available publicly in the Github repository https://github.com/dna-storage/hedges-soft-decoder (10.5281/zenodo.11454877). All raw FAST5/FASTQ data are available at 10.5281/zenodo.11985454 and 10.5281/zenodo.12014515.

BioinformaticsVol. 41(1)

North Carolina State University (US), Johns Hopkins University (US), Johns Hopkins Medicine (US)

National Science Foundation

Quality Education

Openalex Percentile: Top 21%

DNA and Biological Computing

1.17

DOI Open Access PDF OpenAlex

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Nanopore decoding with speed and versatility for data storage — Kevin Volkel, Paul W. Hook, et al. · Bioinformatics (2024) | TGRS Research Map | TGRS