Using Large Language Models to Retrieve Critical Data from Clinical Processes and Business Rules

Current clinical care relies heavily on complex, rule-based systems for tasks like diagnosis and treatment. However, these systems can be cumbersome and require constant updates. This study explores the potential of the large language model (LLM), LLaMA 2, to address these limitations. We tested LLaMA 2's performance in interpreting complex clinical process models, such as Mayo Clinic Care Pathway Models (CPMs), and providing accurate clinical recommendations. LLM was trained on encoded pathways versions using DOT language, embedding them with SentenceTransformer, and then presented with hypothetical patient cases. We compared the token-level accuracy between LLM output and the ground truth by measuring both node and edge accuracy. LLaMA 2 accurately retrieved the diagnosis, suggested further evaluation, and delivered appropriate management steps, all based on the pathways. The average node accuracy across the different pathways was 0.91 (SD ± 0.045), while the average edge accuracy was 0.92 (SD ± 0.122). This study highlights the potential of LLMs for healthcare information retrieval, especially when relevant data are provided. Future research should focus on improving these models' interpretability and their integration into existing clinical workflows.

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Publication Details

Journal
Bioengineering
Published
2024-12-28
DOI
https://doi.org/10.3390/bioengineering12010017
Citations
10
Primary Topic
Biomedical Text Mining and Ontologies
Type
article
Field-Weighted Citation Impact
2.34
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article

Using Large Language Models to Retrieve Critical Data from Clinical Processes and Business Rules

Svetlana Makarova, Sahar Borna, Antonio J. Forte, Yunguo Yu et al.
10 citations
Bioengineering
Biomedical Text Mining and Ontologies
2.34
article

Using Large Language Models to Retrieve Critical Data from Clinical Processes and Business Rules

Svetlana Makarova, Sahar Borna, Antonio J. Forte, Yunguo Yu, Cesar A. Gomez-Cabello, Yogesh Parte, Syed Ali Haider, Ariana Genovese, Srinivasagam Prabha
article en
10 citations

Abstract

Current clinical care relies heavily on complex, rule-based systems for tasks like diagnosis and treatment. However, these systems can be cumbersome and require constant updates. This study explores the potential of the large language model (LLM), LLaMA 2, to address these limitations. We tested LLaMA 2's performance in interpreting complex clinical process models, such as Mayo Clinic Care Pathway Models (CPMs), and providing accurate clinical recommendations. LLM was trained on encoded pathways versions using DOT language, embedding them with SentenceTransformer, and then presented with hypothetical patient cases. We compared the token-level accuracy between LLM output and the ground truth by measuring both node and edge accuracy. LLaMA 2 accurately retrieved the diagnosis, suggested further evaluation, and delivered appropriate management steps, all based on the pathways. The average node accuracy across the different pathways was 0.91 (SD ± 0.045), while the average edge accuracy was 0.92 (SD ± 0.122). This study highlights the potential of LLMs for healthcare information retrieval, especially when relevant data are provided. Future research should focus on improving these models' interpretability and their integration into existing clinical workflows.

BioengineeringVol. 12(1)
Mayo Clinic (US), Mayo Clinic in Florida (US)
Quality Education
Openalex Percentile: Top 11%
Biomedical Text Mining and Ontologies
2.34
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Using Large Language Models to Retrieve Critical Data from Clinical Processes and Business Rules — Svetlana Makarova, Sahar Borna, et al. · Bioengineering (2024) | TGRS Research Map | TGRS