Identification of O-glycosylation related genes and subtypes in ulcerative colitis based on machine learning

Ulcerative colitis (UC) is an immune-related inflammatory bowel disease, with its underlying mechanisms being a central area of clinical research. O-GlcNAcylation plays a critical role in regulating immunity progression and the occurrence of inflammatory diseases and tumors. Yet, the mechanism of O-GlcNAc-associated colitis remains to be elucidated. To this end, the transcriptional and clinical data of GSE75214 and GSE92415 from the GEO database was hereby examined, and genes MUC1, ADAMTS1, GXYLT2, and SEMA5A were found to be significantly related to O-GlcNAcylation using machine learning methods. Based on the four hub genes, two UC subtypes were built. Notably, subtype B might be prone to developing colitis-associated colorectal cancer (CAC). This study delved into the role of intestinal glycosylation changes, especially the O-GlcNAcylation, and forged a foundation for further research on the occurrence and development of UC. Overall, understanding the role of O-GlcNAcylation in UC could have significant implications for diagnosis and treatment, offering valuable insights into the disease's progression.

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Publication Details

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PLoS ONE
Published
2024-12-31
DOI
https://doi.org/10.1371/journal.pone.0311495
Citations
1
Primary Topic
Galectins and Cancer Biology
Type
article
Field-Weighted Citation Impact
0.24

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article

Identification of O-glycosylation related genes and subtypes in ulcerative colitis based on machine learning

Huichao Zhang, Nan Wang, Dongyue Li, Yue Lu et al.
1 citations
PLoS ONE
Galectins and Cancer Biology
0.24
article

Identification of O-glycosylation related genes and subtypes in ulcerative colitis based on machine learning

Huichao Zhang, Nan Wang, Dongyue Li, Yue Lu, Yi Su, Hongyu Xu
article en
1 citations

Abstract

Ulcerative colitis (UC) is an immune-related inflammatory bowel disease, with its underlying mechanisms being a central area of clinical research. O-GlcNAcylation plays a critical role in regulating immunity progression and the occurrence of inflammatory diseases and tumors. Yet, the mechanism of O-GlcNAc-associated colitis remains to be elucidated. To this end, the transcriptional and clinical data of GSE75214 and GSE92415 from the GEO database was hereby examined, and genes MUC1, ADAMTS1, GXYLT2, and SEMA5A were found to be significantly related to O-GlcNAcylation using machine learning methods. Based on the four hub genes, two UC subtypes were built. Notably, subtype B might be prone to developing colitis-associated colorectal cancer (CAC). This study delved into the role of intestinal glycosylation changes, especially the O-GlcNAcylation, and forged a foundation for further research on the occurrence and development of UC. Overall, understanding the role of O-GlcNAcylation in UC could have significant implications for diagnosis and treatment, offering valuable insights into the disease's progression.

PLoS ONEVol. 19(12)
Harbin Medical University (CN), First Affiliated Hospital of Harbin Medical University (CN)
Harbin Medical University, Natural Science Foundation of Heilongjiang Province
Good health and well-being
Openalex Percentile: Top 39%
Galectins and Cancer Biology
0.24
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