SampleExplorer: using language models to discover relevant transcriptome data
Availability and implementation: SampleExplorer is available as a Python package compatible with versions 3.9 to 3.11, available for installation via the Python Package Index (PyPI). The codebase and documentation are accessible at https://github.com/wlchin/SampleExplorer. Supplementary data (Supplementary Materials and Methods) provides detailed methodological information, including an algorithmic description of the retrieval process and data preparation steps.
Authors
- Wee Loong Chin (ORCID: https://orcid.org/0000-0002-2549-3601)
- Timo Lassmann (ORCID: https://orcid.org/0000-0002-0138-2691)
Institutions
- The University of Western Australia (AU)
- Princess Margaret Hospital for Children (AU)
- Sir Charles Gairdner Hospital (AU)
- Queen Elizabeth II Medical Centre (AU)
Publication Details
- Journal
- Bioinformatics
- Published
- 2024-12-26
- DOI
- https://doi.org/10.1093/bioinformatics/btae759
- Primary Topic
- Bioinformatics and Genomic Networks
- Type
- article
- Field-Weighted Citation Impact
- 0.00