The complete mitochondrial genome of the grasshopper <i>Chorthippus dubius</i> (Zub.) (Orthoptera: Acrididae: Gomphocerinae): detailed characterization and phylogenetic position

<i>Chorthippus dubius</i> (Zub.) is one of the dominant grasshopper species. The limited data on <i>Ch. dubius</i> (Zub.) has impeded further understanding of its genetic characteristics and molecular detection. In this study, we analyzed the mitogenome of <i>Ch. dubius</i> (Zub.), which was 15,561 bp in length and contained 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes and an AT-rich region. The entire mtDNA exhibited a strong AT bias, with an overall A+T content of 74.8%. The relative synonymous codon usage (RSCU) analysis revealed UUA (L) as the most frequently used codon. All the PCGs evolved under purifying selection (Ka/Ks <0.5), with <i>ATP8</i> gene exhibited the highest Ka/Ks ratio. Maximum likelihood (ML) and Bayesian inference (BI) analyses reconstructed two topologically similar phylogenetic trees, and supported the monophly of the six subfamilies in Acrididae. Our results indicated two stable clades of the six subfamilies, with Oedipodinae emerging as the ancestral taxon and being sister group to the remaining taxa. In the alternative phylogenetic lineage, the remaining five subfamilies clustered the following relationship: Gomphocernae + (Acridinae + (Calliptaminae + (Melanoplinae + Oxyinae))). Both phylogenetic trees exhibited a closer relationship between <i>Chorthippus dubius</i> (Zub.) and <i>Chorthippus aethalinus</i>, members from the same genus.

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Journal
Mitochondrial DNA Part A
Published
2024-12-30
DOI
https://doi.org/10.1080/24701394.2024.2446772
Primary Topic
Genomics and Phylogenetic Studies
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article
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article

The complete mitochondrial genome of the grasshopper Chorthippus dubius (Zub.) (Orthoptera: Acrididae: Gomphocerinae): detailed characterization and phylogenetic position

Li Yuan, J.-N. Liu, Yang Hu, Xiaoli Liu et al.
Mitochondrial DNA Part A
Genomics and Phylogenetic Studies
article

The complete mitochondrial genome of the grasshopper Chorthippus dubius (Zub.) (Orthoptera: Acrididae: Gomphocerinae): detailed characterization and phylogenetic position

Li Yuan, J.-N. Liu, Yang Hu, Xiaoli Liu, Yun Fu, Xinxin Li, Tao Sun, Di Meng
article en

Abstract

<i>Chorthippus dubius</i> (Zub.) is one of the dominant grasshopper species. The limited data on <i>Ch. dubius</i> (Zub.) has impeded further understanding of its genetic characteristics and molecular detection. In this study, we analyzed the mitogenome of <i>Ch. dubius</i> (Zub.), which was 15,561 bp in length and contained 13 protein-coding genes (PCGs), 22 tRNA genes, 2 rRNA genes and an AT-rich region. The entire mtDNA exhibited a strong AT bias, with an overall A+T content of 74.8%. The relative synonymous codon usage (RSCU) analysis revealed UUA (L) as the most frequently used codon. All the PCGs evolved under purifying selection (Ka/Ks <0.5), with <i>ATP8</i> gene exhibited the highest Ka/Ks ratio. Maximum likelihood (ML) and Bayesian inference (BI) analyses reconstructed two topologically similar phylogenetic trees, and supported the monophly of the six subfamilies in Acrididae. Our results indicated two stable clades of the six subfamilies, with Oedipodinae emerging as the ancestral taxon and being sister group to the remaining taxa. In the alternative phylogenetic lineage, the remaining five subfamilies clustered the following relationship: Gomphocernae + (Acridinae + (Calliptaminae + (Melanoplinae + Oxyinae))). Both phylogenetic trees exhibited a closer relationship between <i>Chorthippus dubius</i> (Zub.) and <i>Chorthippus aethalinus</i>, members from the same genus.

Mitochondrial DNA Part AVol. 35(3-4)
Huaibei Normal University (CN)
Openalex Percentile: Top 79%
Genomics and Phylogenetic Studies
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The complete mitochondrial genome of the grasshopper <i>Chorthippus dubius</i> (Zub.) (Orthoptera: Acrididae: Gomphocerinae): detailed characterization and phylogenetic position — Li Yuan, J.-N. Liu, et al. · Mitochondrial DNA Part A (2024) | TGRS Research Map | TGRS