Identification and characterization of 17 novel polynucleotide microsatellite markers in Ocypode stimpsoni (Decapoda: Ocypodidae)

Out of the 63 loci examined, 26 were effectively amplified in a sample of 100 individuals. These 17 loci, comprising four tri-nucleotide and 13 tetra-nucleotide repeats, exhibited a range of 4 to 26 alleles per locus (with an average of 14.1 alleles) across 100 samples from three O. stimpsoni populations. The mean observed and expected heterozygosities were calculated to be 0.885 and 0.836, respectively. These 17 newly identified polymorphic microsatellite loci hold valuable utility for investigating the genetic structure and diversity of this protected marine species.

Authors

Institutions

Publication Details

Journal
BMC Research Notes
Published
2024-12-30
DOI
https://doi.org/10.1186/s13104-024-07049-3
Primary Topic
Genetic diversity and population structure
Type
article
Field-Weighted Citation Impact
0.00

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Identification and characterization of 17 novel polynucleotide microsatellite markers in Ocypode stimpsoni (Decapoda: Ocypodidae)

Hyun Ki Choi, Kyung Min Choi, Dea-Sung Lee, Seungki Lee et al.
BMC Research Notes
Genetic diversity and population structure
article

Identification and characterization of 17 novel polynucleotide microsatellite markers in Ocypode stimpsoni (Decapoda: Ocypodidae)

Hyun Ki Choi, Kyung Min Choi, Dea-Sung Lee, Seungki Lee, Ha Yeun Song, Namki Cho, Kang-Yeol Yu, Young Ji Choi
article en

Abstract

Out of the 63 loci examined, 26 were effectively amplified in a sample of 100 individuals. These 17 loci, comprising four tri-nucleotide and 13 tetra-nucleotide repeats, exhibited a range of 4 to 26 alleles per locus (with an average of 14.1 alleles) across 100 samples from three O. stimpsoni populations. The mean observed and expected heterozygosities were calculated to be 0.885 and 0.836, respectively. These 17 newly identified polymorphic microsatellite loci hold valuable utility for investigating the genetic structure and diversity of this protected marine species.

BMC Research NotesVol. 17(1)
Chonnam National University (KR), National Institute of Biological Resources (KR), Marine Biodiversity Institute of Korea (KR)
Ministry of Environment, Ministry of Education, India, National Marine Biodiversity Institute of Korea, Korea Environmental Industry and Technology Institute
Life below water
Openalex Percentile: Top 73%
Genetic diversity and population structure
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.