DFT theoretical calculations on (Z)-2-hydroxy-N′-(4-oxo-1,3-thiazolidin-2-ylidene) benzohydrazide as a methylene tetrahydrofolatereductase inhibitor: An in silico study, molecular docking, and molecular dynamics simulations

In this study, (Z)-2-hydroxy-N′-(4-oxo-1,3-thiazolidin-2-ylidene)benzohydrazide (HTBH) was theoretically studied. The B3LYP/6-311G (d,p) level of calculation was used to accomplish the optimal molecular geometry, the global reactivity descriptor parameters, Fukui functions, and molecular electrostatic potential (MEP) parameters. The reduced density gradient (RDG) was used to explore the non-covalent interactions in the molecular system. Furthermore, possible nonlinear optical characteristics were explored. These properties include the electric dipole moment, mean polarizability, and first and second hyperpolarizabilities, indicating the intriguing uses of the HTBH in optical systems. The dipole moment of HTBH molecule was calculated to be 6.81 D, while the static second order hyperpolarizabilitywas found to be of 29.86×10-36esu. In addition, the MEP map provides insight into the electrostatic potential distribution within the molecule indicating that most nucleophilicand electrophilic regions are around oxygen atoms and H atom of the hydroxyl group, respectively.Using molecular docking, the inhibitory nature of HTBH against the methylene tetrahydrofolatereductase (NADPH) protein was analyzed. This enzyme involves in folate metabolism, and its inhibition can have implications for various biological processes. Finally, through a detailed molecular dynamics (MD) simulation, we unravel the compound's inhibitory potential and binding characteristics, offering valuable information for developing therapeutic interventions. The binding energies were computed as well by using the MM-PBSA.

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Journal
Turkish computational and theoretical chemistry/Turkish computational and theoretical chemistry :
Published
2024-12-29
DOI
https://doi.org/10.33435/tcandtc.1493008
Citations
2
Primary Topic
Nonlinear Optical Materials Research
Type
article
Field-Weighted Citation Impact
0.24

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article

DFT theoretical calculations on (Z)-2-hydroxy-N′-(4-oxo-1,3-thiazolidin-2-ylidene) benzohydrazide as a methylene tetrahydrofolatereductase inhibitor: An in silico study, molecular docking, and molecular dynamics simulations

Nadia Benhalima, Youcef Megrouss, Rachida Rahmani, Fatima Zohra Boudjenane et al.
2 citations
Turkish computational and theoretical chemistry/Turkish computational and theoretical chemistry :
Nonlinear Optical Materials Research
0.24
article

DFT theoretical calculations on (Z)-2-hydroxy-N′-(4-oxo-1,3-thiazolidin-2-ylidene) benzohydrazide as a methylene tetrahydrofolatereductase inhibitor: An in silico study, molecular docking, and molecular dynamics simulations

Nadia Benhalima, Youcef Megrouss, Rachida Rahmani, Fatima Zohra Boudjenane, Abdelkader Chouaıh
article en
2 citations

Abstract

In this study, (Z)-2-hydroxy-N′-(4-oxo-1,3-thiazolidin-2-ylidene)benzohydrazide (HTBH) was theoretically studied. The B3LYP/6-311G (d,p) level of calculation was used to accomplish the optimal molecular geometry, the global reactivity descriptor parameters, Fukui functions, and molecular electrostatic potential (MEP) parameters. The reduced density gradient (RDG) was used to explore the non-covalent interactions in the molecular system. Furthermore, possible nonlinear optical characteristics were explored. These properties include the electric dipole moment, mean polarizability, and first and second hyperpolarizabilities, indicating the intriguing uses of the HTBH in optical systems. The dipole moment of HTBH molecule was calculated to be 6.81 D, while the static second order hyperpolarizabilitywas found to be of 29.86×10-36esu. In addition, the MEP map provides insight into the electrostatic potential distribution within the molecule indicating that most nucleophilicand electrophilic regions are around oxygen atoms and H atom of the hydroxyl group, respectively.Using molecular docking, the inhibitory nature of HTBH against the methylene tetrahydrofolatereductase (NADPH) protein was analyzed. This enzyme involves in folate metabolism, and its inhibition can have implications for various biological processes. Finally, through a detailed molecular dynamics (MD) simulation, we unravel the compound's inhibitory potential and binding characteristics, offering valuable information for developing therapeutic interventions. The binding energies were computed as well by using the MM-PBSA.

Turkish computational and theoretical chemistry/Turkish computational and theoretical chemistry :Vol. 9(1)
Université de Mostaganem (DZ), Université de Saida Dr.Moulay Tahar (DZ), Ahmed Zabana University - Relizane (DZ), Hassiba Benbouali University of Chlef (DZ)
Direction Générale de la Recherche Scientifique et du Développement Technologique
Openalex Percentile: Top 55%
Nonlinear Optical Materials Research
0.24
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