Computer-aided design of caffeic acid derivatives: free radical scavenging activity and reaction force

Three protocols were used: (i) CADMA-Chem (computer-assisted design of multifunctional antioxidants, based on chemical properties) to quantify ADME (absorption, distribution, metabolism, and excretion) properties, toxicity and synthetic accessibility; (ii) eH-DAMA (electron and hydrogen donating ability map) tool, to identify the derivatives expected to behave as the best antioxidants; (iii) QM-ORSA (quantum mechanics-based test for overall free radical scavenging activity), to calculate the rate constants. Electronic structure calculations were performed with Gaussian 09, at the M05-2X/6-311 + g(d,p) level of theory. Both aqueous and lipid environments were considered using the SMD continuous solvation model. Intrinsic reaction coordinate (IRC) calculations, as implemented in Gaussian 09, were used to obtain the reaction force.

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Publication Details

Journal
Journal of Molecular Modeling
Published
2024-12-27
DOI
https://doi.org/10.1007/s00894-024-06226-2
Citations
2
Primary Topic
Free Radicals and Antioxidants
Type
article
Field-Weighted Citation Impact
0.50

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article

Computer-aided design of caffeic acid derivatives: free radical scavenging activity and reaction force

J. Raúl Alvarez‐Idaboy, Adriana Pérez‐González, Annia Galano, B. Carolina Morales-García
2 citations
Journal of Molecular Modeling
Free Radicals and Antioxidants
0.50
article

Computer-aided design of caffeic acid derivatives: free radical scavenging activity and reaction force

J. Raúl Alvarez‐Idaboy, Adriana Pérez‐González, Annia Galano, B. Carolina Morales-García
article en
2 citations

Abstract

Three protocols were used: (i) CADMA-Chem (computer-assisted design of multifunctional antioxidants, based on chemical properties) to quantify ADME (absorption, distribution, metabolism, and excretion) properties, toxicity and synthetic accessibility; (ii) eH-DAMA (electron and hydrogen donating ability map) tool, to identify the derivatives expected to behave as the best antioxidants; (iii) QM-ORSA (quantum mechanics-based test for overall free radical scavenging activity), to calculate the rate constants. Electronic structure calculations were performed with Gaussian 09, at the M05-2X/6-311 + g(d,p) level of theory. Both aqueous and lipid environments were considered using the SMD continuous solvation model. Intrinsic reaction coordinate (IRC) calculations, as implemented in Gaussian 09, were used to obtain the reaction force.

Journal of Molecular ModelingVol. 31(1)
Universidad Autónoma Metropolitana (MX), Universidad Nacional Autónoma de México (MX)
Universidad Autónoma Metropolitana unidad Iztapalapa
Openalex Percentile: Top 37%
Free Radicals and Antioxidants
0.50
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Computer-aided design of caffeic acid derivatives: free radical scavenging activity and reaction force — J. Raúl Alvarez‐Idaboy, Adriana Pérez‐González, et al. · Journal of Molecular Modeling (2024) | TGRS Research Map | TGRS