Whole-genome sequence of Pseudomonas sp. strain HOU2 isolated from dangshen (Codonopsis javanica) roots

The genomic DNA of Pseudomonas sp. strain HOU2 was sequenced using Oxford Nanopore's PromethION sequencer with an R10.4.1 flow cell (Table 1, Data file 1). The assembly of the Pseudomonas sp. strain HOU2 genome was conducted using Flye version 2.9, resulting in a single circular chromosome of 6,047,544 bp with a mean coverage of 488 (Table 1, Data file 2). The annotation of genes, proteins, and features of the HOU2 genome were performed by the RAST server (Rapid Annotation using Subsystem Technology) ( https://rast.nmpdr.org/ ) (Table 1, Data file 3, 4, 5) [6, 7]. The Pseudomonas sp. strain HOU2 genome was determined to be most similar to that of Pseudomonas koreensis using the Type Strain Genome Server ( https://tygs.dsmz.de/ , version v391) [8].

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Journal
BMC Genomic Data
Published
2024-12-26
DOI
https://doi.org/10.1186/s12863-024-01291-1
Primary Topic
Plant Pathogenic Bacteria Studies
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article
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article

Whole-genome sequence of Pseudomonas sp. strain HOU2 isolated from dangshen (Codonopsis javanica) roots

Son Truong Dinh, Truong Xuan Nguyen, Nguyễn Văn Hiếu, Loan Nguyen et al.
BMC Genomic Data
Plant Pathogenic Bacteria Studies
article

Whole-genome sequence of Pseudomonas sp. strain HOU2 isolated from dangshen (Codonopsis javanica) roots

Son Truong Dinh, Truong Xuan Nguyen, Nguyễn Văn Hiếu, Loan Nguyen, Vinh T. Nguyen, Khanh Phuong, Van Hong Thi Dao, Khanh Ngoc Pham
article en

Abstract

The genomic DNA of Pseudomonas sp. strain HOU2 was sequenced using Oxford Nanopore's PromethION sequencer with an R10.4.1 flow cell (Table 1, Data file 1). The assembly of the Pseudomonas sp. strain HOU2 genome was conducted using Flye version 2.9, resulting in a single circular chromosome of 6,047,544 bp with a mean coverage of 488 (Table 1, Data file 2). The annotation of genes, proteins, and features of the HOU2 genome were performed by the RAST server (Rapid Annotation using Subsystem Technology) ( https://rast.nmpdr.org/ ) (Table 1, Data file 3, 4, 5) [6, 7]. The Pseudomonas sp. strain HOU2 genome was determined to be most similar to that of Pseudomonas koreensis using the Type Strain Genome Server ( https://tygs.dsmz.de/ , version v391) [8].

BMC Genomic DataVol. 25(1)
The University of Queensland (AU), Hanoi Open University (VN), Vietnam National University of Agriculture (VN), Agriculture and Food (AU), Vietnam Academy of Science and Technology (VN)
Life in Land
Openalex Percentile: Top 86%
Plant Pathogenic Bacteria Studies
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