In situ characterization of amine‐forming enzymes shows altered oligomeric state

Enzyme stability can be measured in a number of ways, including melting temperature, activity retention, and size analysis. However, these measurements are often conducted in an idealized storage buffer and not in the relevant enzymatic reaction media. Particularly for reactions that occur in alkaline, volatile, and high ionic strength media, typical analyses using differential scanning calorimetry, light scattering, and sodium dodecyl-sulfate polyacrylamide gel electrophoresis are not satisfactory to track the stability of these enzymes. In this work, we monitor the stability of engineered and native dehydrogenases that require a high amount of ammonia for their reaction to occur. We demonstrate the benefits of analyzing these enzymes in their reaction buffer, uncovering trends that were not observable in the typical phosphate storage buffer. This work provides a framework for analyzing the stability of many other enzymes whose reaction media is not suitable for traditional techniques. We introduce several strategies for measuring the melting temperature, oligomeric state, and activity of these enzymes in their reaction media. Further, we have identified opportunities for integration of computational tools into this workflow to engineer enzymes more effectively for solvent tolerance and improved stability.

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Publication Details

Journal
Protein Science
Published
2024-12-25
DOI
https://doi.org/10.1002/pro.5248
Citations
1
Primary Topic
Enzyme Catalysis and Immobilization
Type
article
Field-Weighted Citation Impact
0.23

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article

In situ characterization of amine‐forming enzymes shows altered oligomeric state

Adam A. Caparco, Bettina Bommarius, Laurine Ducrot, Julie A. Champion et al.
1 citations
Protein Science
Enzyme Catalysis and Immobilization
0.23
article

In situ characterization of amine‐forming enzymes shows altered oligomeric state

Adam A. Caparco, Bettina Bommarius, Laurine Ducrot, Julie A. Champion, Carine Vergne‐Vaxelaire, Andreas S. Bommarius
article en
1 citations

Abstract

Enzyme stability can be measured in a number of ways, including melting temperature, activity retention, and size analysis. However, these measurements are often conducted in an idealized storage buffer and not in the relevant enzymatic reaction media. Particularly for reactions that occur in alkaline, volatile, and high ionic strength media, typical analyses using differential scanning calorimetry, light scattering, and sodium dodecyl-sulfate polyacrylamide gel electrophoresis are not satisfactory to track the stability of these enzymes. In this work, we monitor the stability of engineered and native dehydrogenases that require a high amount of ammonia for their reaction to occur. We demonstrate the benefits of analyzing these enzymes in their reaction buffer, uncovering trends that were not observable in the typical phosphate storage buffer. This work provides a framework for analyzing the stability of many other enzymes whose reaction media is not suitable for traditional techniques. We introduce several strategies for measuring the melting temperature, oligomeric state, and activity of these enzymes in their reaction media. Further, we have identified opportunities for integration of computational tools into this workflow to engineer enzymes more effectively for solvent tolerance and improved stability.

Protein ScienceVol. 34(1)
Northeastern University (US), Centre National de la Recherche Scientifique (FR), Georgia Institute of Technology (US), Commissariat à l'Énergie Atomique et aux Énergies Alternatives (FR), Université Paris-Saclay (FR), Genoscope (FR), CEA Paris-Saclay (FR)
National Science Foundation, Georgia Institute of Technology, Commissariat à l'Énergie Atomique et aux Énergies Alternatives, Conseil National de la Recherche Scientifique, Université Paris-Saclay, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Division of Chemical, Bioengineering, Environmental, and Transport Systems
Openalex Percentile: Top 40%
Enzyme Catalysis and Immobilization
0.23
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